293 related articles for article (PubMed ID: 27846907)
1. Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue.
Kader T; Goode DL; Wong SQ; Connaughton J; Rowley SM; Devereux L; Byrne D; Fox SB; Mir Arnau G; Tothill RW; Campbell IG; Gorringe KL
Genome Med; 2016 Nov; 8(1):121. PubMed ID: 27846907
[TBL] [Abstract][Full Text] [Related]
2. Comprehensive Screening of Gene Copy Number Aberrations in Formalin-Fixed, Paraffin-Embedded Solid Tumors Using Molecular Inversion Probe-Based Single-Nucleotide Polymorphism Array.
Singh RR; Mehrotra M; Chen H; Almohammedsalim AA; Sahin A; Bosamra A; Patel KP; Routbort MJ; Lu X; Ronald A; Mishra BM; Virani S; Medeiros LJ; Luthra R
J Mol Diagn; 2016 Sep; 18(5):676-687. PubMed ID: 27392636
[TBL] [Abstract][Full Text] [Related]
3. Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers.
Chin SF; Santonja A; Grzelak M; Ahn S; Sammut SJ; Clifford H; Rueda OM; Pugh M; Goldgraben MA; Bardwell HA; Cho EY; Provenzano E; Rojo F; Alba E; Caldas C
Exp Mol Pathol; 2018 Jun; 104(3):161-169. PubMed ID: 29608913
[TBL] [Abstract][Full Text] [Related]
4. Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.
Munchel S; Hoang Y; Zhao Y; Cottrell J; Klotzle B; Godwin AK; Koestler D; Beyerlein P; Fan JB; Bibikova M; Chien J
Oncotarget; 2015 Sep; 6(28):25943-61. PubMed ID: 26305677
[TBL] [Abstract][Full Text] [Related]
5. Low-coverage whole-genome sequencing of extracellular vesicle-associated DNA in patients with metastatic cancer.
Nguyen B; Wong NC; Semple T; Clark M; Wong SQ; Leslie C; Mirzai B; Millward M; Meehan K; Lim AM
Sci Rep; 2021 Feb; 11(1):4016. PubMed ID: 33597619
[TBL] [Abstract][Full Text] [Related]
6. Validation of quantitative PCR-based assays for detection of gene copy number aberrations in formalin-fixed, paraffin embedded solid tumor samples.
Mehrotra M; Luthra R; Abraham R; Mishra BM; Virani S; Chen H; Routbort MJ; Patel KP; Medeiros LJ; Singh RR
Cancer Genet; 2017 Apr; 212-213():24-31. PubMed ID: 28449808
[TBL] [Abstract][Full Text] [Related]
7. Single-strand DNA library preparation improves sequencing of formalin-fixed and paraffin-embedded (FFPE) cancer DNA.
Stiller M; Sucker A; Griewank K; Aust D; Baretton GB; Schadendorf D; Horn S
Oncotarget; 2016 Sep; 7(37):59115-59128. PubMed ID: 27463017
[TBL] [Abstract][Full Text] [Related]
8. Whole genome SNP arrays using DNA derived from formalin-fixed, paraffin-embedded ovarian tumor tissue.
Thompson ER; Herbert SC; Forrest SM; Campbell IG
Hum Mutat; 2005 Oct; 26(4):384-9. PubMed ID: 16116623
[TBL] [Abstract][Full Text] [Related]
9. Reference Size Matching, Whole-Genome Amplification, and Fluorescent Labeling as a Method for Chromosomal Microarray Analysis of Clinically Actionable Copy Number Alterations in Formalin-Fixed, Paraffin-Embedded Tumor Tissue.
Gunn SR; Govender S; Sims CL; Khurana A; Koo S; Scoggin J; Moore MW; Cotter PD
J Mol Diagn; 2018 May; 20(3):279-288. PubMed ID: 29471114
[TBL] [Abstract][Full Text] [Related]
10. Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project.
Robbe P; Popitsch N; Knight SJL; Antoniou P; Becq J; He M; Kanapin A; Samsonova A; Vavoulis DV; Ross MT; Kingsbury Z; Cabes M; Ramos SDC; Page S; Dreau H; Ridout K; Jones LJ; Tuff-Lacey A; Henderson S; Mason J; Buffa FM; Verrill C; Maldonado-Perez D; Roxanis I; Collantes E; Browning L; Dhar S; Damato S; Davies S; Caulfield M; Bentley DR; Taylor JC; Turnbull C; Schuh A;
Genet Med; 2018 Oct; 20(10):1196-1205. PubMed ID: 29388947
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays.
Jacobs S; Thompson ER; Nannya Y; Yamamoto G; Pillai R; Ogawa S; Bailey DK; Campbell IG
Cancer Res; 2007 Mar; 67(6):2544-51. PubMed ID: 17363572
[TBL] [Abstract][Full Text] [Related]
12. High-resolution copy number profiling by array CGH using DNA isolated from formalin-fixed, paraffin-embedded tissues.
van Essen HF; Ylstra B
Methods Mol Biol; 2012; 838():329-41. PubMed ID: 22228020
[TBL] [Abstract][Full Text] [Related]
13. DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly.
Scheinin I; Sie D; Bengtsson H; van de Wiel MA; Olshen AB; van Thuijl HF; van Essen HF; Eijk PP; Rustenburg F; Meijer GA; Reijneveld JC; Wesseling P; Pinkel D; Albertson DG; Ylstra B
Genome Res; 2014 Dec; 24(12):2022-32. PubMed ID: 25236618
[TBL] [Abstract][Full Text] [Related]
14. Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays.
Tuefferd M; De Bondt A; Van Den Wyngaert I; Talloen W; Verbeke T; Carvalho B; Clevert DA; Alifano M; Raghavan N; Amaratunga D; Göhlmann H; Broët P; Camilleri-Broët S
Genes Chromosomes Cancer; 2008 Nov; 47(11):957-64. PubMed ID: 18663747
[TBL] [Abstract][Full Text] [Related]
15. Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues.
Aviel-Ronen S; Qi Zhu C; Coe BP; Liu N; Watson SK; Lam WL; Tsao MS
BMC Genomics; 2006 Dec; 7():312. PubMed ID: 17156491
[TBL] [Abstract][Full Text] [Related]
16. Evaluating the repair of DNA derived from formalin-fixed paraffin-embedded tissues prior to genomic profiling by SNP-CGH analysis.
Hosein AN; Song S; McCart Reed AE; Jayanthan J; Reid LE; Kutasovic JR; Cummings MC; Waddell N; Lakhani SR; Chenevix-Trench G; Simpson PT
Lab Invest; 2013 Jun; 93(6):701-10. PubMed ID: 23568031
[TBL] [Abstract][Full Text] [Related]
17. Comparison of Accuracy of Whole-Exome Sequencing with Formalin-Fixed Paraffin-Embedded and Fresh Frozen Tissue Samples.
Oh E; Choi YL; Kwon MJ; Kim RN; Kim YJ; Song JY; Jung KS; Shin YK
PLoS One; 2015; 10(12):e0144162. PubMed ID: 26641479
[TBL] [Abstract][Full Text] [Related]
18. Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST).
Astolfi A; Urbini M; Indio V; Nannini M; Genovese CG; Santini D; Saponara M; Mandrioli A; Ercolani G; Brandi G; Biasco G; Pantaleo MA
BMC Genomics; 2015 Nov; 16():892. PubMed ID: 26531060
[TBL] [Abstract][Full Text] [Related]
19. Oligonucleotide array outperforms SNP array on formalin-fixed paraffin-embedded clinical samples.
Nasri S; Anjomshoaa A; Song S; Guilford P; McNoe L; Black M; Phillips V; Reeve A; Humar B
Cancer Genet Cytogenet; 2010 Apr; 198(1):1-6. PubMed ID: 20303007
[TBL] [Abstract][Full Text] [Related]
20. Array-based comparative genomic hybridization from formalin-fixed, paraffin-embedded breast tumors.
Devries S; Nyante S; Korkola J; Segraves R; Nakao K; Moore D; Bae H; Wilhelm M; Hwang S; Waldman F
J Mol Diagn; 2005 Feb; 7(1):65-71. PubMed ID: 15681476
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]