These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 27855707)

  • 1. A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes.
    Peng G; Ji P; Zhao F
    Genome Biol; 2016 Nov; 17(1):232. PubMed ID: 27855707
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.
    Mbandi SK; Hesse U; van Heusden P; Christoffels A
    BMC Bioinformatics; 2015 Feb; 16(1):58. PubMed ID: 25880035
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data.
    Fu S; Tarone AM; Sze SH
    BMC Genomics; 2015; 16 Suppl 11(Suppl 11):S5. PubMed ID: 26576690
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix.
    Yoon S; Kim D; Kang K; Park WJ
    BMC Genomics; 2018 Sep; 19(1):653. PubMed ID: 30180798
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.
    Sze SH; Tarone AM
    BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S6. PubMed ID: 25082000
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.
    Fu S; Chang PL; Friesen ML; Teakle NL; Tarone AM; Sze SH
    BMC Genomics; 2019 Jun; 20(Suppl 5):425. PubMed ID: 31167652
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne.
    Ruttink T; Sterck L; Rohde A; Bendixen C; Rouzé P; Asp T; Van de Peer Y; Roldan-Ruiz I
    Plant Biotechnol J; 2013 Jun; 11(5):605-17. PubMed ID: 23433242
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FRAMA: from RNA-seq data to annotated mRNA assemblies.
    Bens M; Sahm A; Groth M; Jahn N; Morhart M; Holtze S; Hildebrandt TB; Platzer M; Szafranski K
    BMC Genomics; 2016 Jan; 17():54. PubMed ID: 26763976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.
    Bräutigam A; Mullick T; Schliesky S; Weber AP
    J Exp Bot; 2011 May; 62(9):3093-102. PubMed ID: 21398430
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 11. deBGR: an efficient and near-exact representation of the weighted de Bruijn graph.
    Pandey P; Bender MA; Johnson R; Patro R
    Bioinformatics; 2017 Jul; 33(14):i133-i141. PubMed ID: 28881995
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph.
    Benoit G; Lemaitre C; Lavenier D; Drezen E; Dayris T; Uricaru R; Rizk G
    BMC Bioinformatics; 2015 Sep; 16():288. PubMed ID: 26370285
    [TBL] [Abstract][Full Text] [Related]  

  • 13. TransRate: reference-free quality assessment of de novo transcriptome assemblies.
    Smith-Unna R; Boursnell C; Patro R; Hibberd JM; Kelly S
    Genome Res; 2016 Aug; 26(8):1134-44. PubMed ID: 27252236
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inference of viral quasispecies with a paired de Bruijn graph.
    Freire B; Ladra S; Paramá JR; Salmela L
    Bioinformatics; 2021 May; 37(4):473-481. PubMed ID: 32926162
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
    Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
    [TBL] [Abstract][Full Text] [Related]  

  • 16. On the representation of de Bruijn graphs.
    Chikhi R; Limasset A; Jackman S; Simpson JT; Medvedev P
    J Comput Biol; 2015 May; 22(5):336-52. PubMed ID: 25629448
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Informed kmer selection for de novo transcriptome assembly.
    Durai DA; Schulz MH
    Bioinformatics; 2016 Jun; 32(11):1670-7. PubMed ID: 27153653
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Challenges and advances for transcriptome assembly in non-model species.
    Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
    PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome.
    Ptitsyn A; Temanni R; Bouchard C; Anderson PA
    PLoS One; 2015; 10(9):e0138006. PubMed ID: 26393794
    [TBL] [Abstract][Full Text] [Related]  

  • 20. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL; Ji L; Li YD
    Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.