BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

458 related articles for article (PubMed ID: 27865038)

  • 1. Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition.
    Lensink MF; Velankar S; Wodak SJ
    Proteins; 2017 Mar; 85(3):359-377. PubMed ID: 27865038
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
    Pallara C; Jiménez-García B; Romero M; Moal IH; Fernández-Recio J
    Proteins; 2017 Mar; 85(3):487-496. PubMed ID: 27701776
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Lessons from (co-)evolution in the docking of proteins and peptides for CAPRI Rounds 28-35.
    Yu J; Andreani J; Ochsenbein F; Guerois R
    Proteins; 2017 Mar; 85(3):378-390. PubMed ID: 27701780
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.
    Schindler CE; Chauvot de Beauchêne I; de Vries SJ; Zacharias M
    Proteins; 2017 Mar; 85(3):391-398. PubMed ID: 27785830
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition.
    Lensink MF; Nadzirin N; Velankar S; Wodak SJ
    Proteins; 2020 Aug; 88(8):916-938. PubMed ID: 31886916
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility.
    Marcu O; Dodson EJ; Alam N; Sperber M; Kozakov D; Lensink MF; Schueler-Furman O
    Proteins; 2017 Mar; 85(3):445-462. PubMed ID: 28002624
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
    Xu X; Qiu L; Yan C; Ma Z; Grinter SZ; Zou X
    Proteins; 2017 Mar; 85(3):424-434. PubMed ID: 27802576
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y; Wen Z; Wang X; Huang SY
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
    El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW
    Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35.
    Marze NA; Jeliazkov JR; Roy Burman SS; Boyken SE; DiMaio F; Gray JJ
    Proteins; 2017 Mar; 85(3):479-486. PubMed ID: 27667482
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Docking, scoring, and affinity prediction in CAPRI.
    Lensink MF; Wodak SJ
    Proteins; 2013 Dec; 81(12):2082-95. PubMed ID: 24115211
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
    Peterson LX; Kim H; Esquivel-Rodriguez J; Roy A; Han X; Shin WH; Zhang J; Terashi G; Lee M; Kihara D
    Proteins; 2017 Mar; 85(3):513-527. PubMed ID: 27654025
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3073-84. PubMed ID: 20806235
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The targets of CAPRI rounds 20-27.
    Janin J
    Proteins; 2013 Dec; 81(12):2075-81. PubMed ID: 23900782
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
    Vreven T; Pierce BG; Borrman TM; Weng Z
    Proteins; 2017 Mar; 85(3):408-416. PubMed ID: 27718275
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
    Lensink MF; Velankar S; Kryshtafovych A; Huang SY; Schneidman-Duhovny D; Sali A; Segura J; Fernandez-Fuentes N; Viswanath S; Elber R; Grudinin S; Popov P; Neveu E; Lee H; Baek M; Park S; Heo L; Rie Lee G; Seok C; Qin S; Zhou HX; Ritchie DW; Maigret B; Devignes MD; Ghoorah A; Torchala M; Chaleil RA; Bates PA; Ben-Zeev E; Eisenstein M; Negi SS; Weng Z; Vreven T; Pierce BG; Borrman TM; Yu J; Ochsenbein F; Guerois R; Vangone A; Rodrigues JP; van Zundert G; Nellen M; Xue L; Karaca E; Melquiond AS; Visscher K; Kastritis PL; Bonvin AM; Xu X; Qiu L; Yan C; Li J; Ma Z; Cheng J; Zou X; Shen Y; Peterson LX; Kim HR; Roy A; Han X; Esquivel-Rodriguez J; Kihara D; Yu X; Bruce NJ; Fuller JC; Wade RC; Anishchenko I; Kundrotas PJ; Vakser IA; Imai K; Yamada K; Oda T; Nakamura T; Tomii K; Pallara C; Romero-Durana M; Jiménez-García B; Moal IH; Férnandez-Recio J; Joung JY; Kim JY; Joo K; Lee J; Kozakov D; Vajda S; Mottarella S; Hall DR; Beglov D; Mamonov A; Xia B; Bohnuud T; Del Carpio CA; Ichiishi E; Marze N; Kuroda D; Roy Burman SS; Gray JJ; Chermak E; Cavallo L; Oliva R; Tovchigrechko A; Wodak SJ
    Proteins; 2016 Sep; 84 Suppl 1(Suppl Suppl 1):323-48. PubMed ID: 27122118
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
    Lensink MF; Brysbaert G; Raouraoua N; Bates PA; Giulini M; Honorato RV; van Noort C; Teixeira JMC; Bonvin AMJJ; Kong R; Shi H; Lu X; Chang S; Liu J; Guo Z; Chen X; Morehead A; Roy RS; Wu T; Giri N; Quadir F; Chen C; Cheng J; Del Carpio CA; Ichiishi E; Rodriguez-Lumbreras LA; Fernandez-Recio J; Harmalkar A; Chu LS; Canner S; Smanta R; Gray JJ; Li H; Lin P; He J; Tao H; Huang SY; Roel-Touris J; Jimenez-Garcia B; Christoffer CW; Jain AJ; Kagaya Y; Kannan H; Nakamura T; Terashi G; Verburgt JC; Zhang Y; Zhang Z; Fujuta H; Sekijima M; Kihara D; Khan O; Kotelnikov S; Ghani U; Padhorny D; Beglov D; Vajda S; Kozakov D; Negi SS; Ricciardelli T; Barradas-Bautista D; Cao Z; Chawla M; Cavallo L; Oliva R; Yin R; Cheung M; Guest JD; Lee J; Pierce BG; Shor B; Cohen T; Halfon M; Schneidman-Duhovny D; Zhu S; Yin R; Sun Y; Shen Y; Maszota-Zieleniak M; Bojarski KK; Lubecka EA; Marcisz M; Danielsson A; Dziadek L; Gaardlos M; Gieldon A; Liwo A; Samsonov SA; Slusarz R; Zieba K; Sieradzan AK; Czaplewski C; Kobayashi S; Miyakawa Y; Kiyota Y; Takeda-Shitaka M; Olechnovic K; Valancauskas L; Dapkunas J; Venclovas C; Wallner B; Yang L; Hou C; He X; Guo S; Jiang S; Ma X; Duan R; Qui L; Xu X; Zou X; Velankar S; Wodak SJ
    Proteins; 2023 Dec; 91(12):1658-1683. PubMed ID: 37905971
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.