191 related articles for article (PubMed ID: 27870845)
1. Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks.
Haraldsdóttir HS; Fleming RM
PLoS Comput Biol; 2016 Nov; 12(11):e1004999. PubMed ID: 27870845
[TBL] [Abstract][Full Text] [Related]
2. The convex basis of the left null space of the stoichiometric matrix leads to the definition of metabolically meaningful pools.
Famili I; Palsson BO
Biophys J; 2003 Jul; 85(1):16-26. PubMed ID: 12829460
[TBL] [Abstract][Full Text] [Related]
3. Quantifying and assessing the effect of chemical symmetry in metabolic pathways.
Zhou W; Nakhleh L
J Chem Inf Model; 2012 Oct; 52(10):2684-96. PubMed ID: 22985501
[TBL] [Abstract][Full Text] [Related]
4. Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites.
Hadadi N; Hafner J; Soh KC; Hatzimanikatis V
Biotechnol J; 2017 Jan; 12(1):. PubMed ID: 27897385
[TBL] [Abstract][Full Text] [Related]
5. Inferring branching pathways in genome-scale metabolic networks.
Pitkänen E; Jouhten P; Rousu J
BMC Syst Biol; 2009 Oct; 3():103. PubMed ID: 19874610
[TBL] [Abstract][Full Text] [Related]
6. Detecting structural invariants in biological reaction networks.
Behre J; de Figueiredo LF; Schuster S; Kaleta C
Methods Mol Biol; 2012; 804():377-407. PubMed ID: 22144164
[TBL] [Abstract][Full Text] [Related]
7. Basic concepts and principles of stoichiometric modeling of metabolic networks.
Maarleveld TR; Khandelwal RA; Olivier BG; Teusink B; Bruggeman FJ
Biotechnol J; 2013 Sep; 8(9):997-1008. PubMed ID: 23893965
[TBL] [Abstract][Full Text] [Related]
8. Dynamic metabolic models in context: biomass backtracking.
Tummler K; Kühn C; Klipp E
Integr Biol (Camb); 2015 Aug; 7(8):940-51. PubMed ID: 26189715
[TBL] [Abstract][Full Text] [Related]
9. Pairwise alignment of protein interaction networks.
Koyutürk M; Kim Y; Topkara U; Subramaniam S; Szpankowski W; Grama A
J Comput Biol; 2006 Mar; 13(2):182-99. PubMed ID: 16597234
[TBL] [Abstract][Full Text] [Related]
10. Fitting a geometric graph to a protein-protein interaction network.
Higham DJ; Rasajski M; Przulj N
Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248
[TBL] [Abstract][Full Text] [Related]
11. Computing atom mappings for biochemical reactions without subgraph isomorphism.
Heinonen M; Lappalainen S; Mielikäinen T; Rousu J
J Comput Biol; 2011 Jan; 18(1):43-58. PubMed ID: 21210731
[TBL] [Abstract][Full Text] [Related]
12. Exploiting stoichiometric redundancies for computational efficiency and network reduction.
Ingalls BP; Bembenek E
In Silico Biol; 2015; 12(1-2):55-67. PubMed ID: 25547516
[TBL] [Abstract][Full Text] [Related]
13. Accurate atom-mapping computation for biochemical reactions.
Latendresse M; Malerich JP; Travers M; Karp PD
J Chem Inf Model; 2012 Nov; 52(11):2970-82. PubMed ID: 22963657
[TBL] [Abstract][Full Text] [Related]
14. A critical examination of stoichiometric and path-finding approaches to metabolic pathways.
Planes FJ; Beasley JE
Brief Bioinform; 2008 Sep; 9(5):422-36. PubMed ID: 18436574
[TBL] [Abstract][Full Text] [Related]
15. Finding minimal generating set for metabolic network with reversible pathways.
Jevremović D; Boley D
Biosystems; 2013 Apr; 112(1):31-6. PubMed ID: 23474418
[TBL] [Abstract][Full Text] [Related]
16. CLCA: maximum common molecular substructure queries within the MetRxn database.
Kumar A; Maranas CD
J Chem Inf Model; 2014 Dec; 54(12):3417-38. PubMed ID: 25412255
[TBL] [Abstract][Full Text] [Related]
17. Path finding methods accounting for stoichiometry in metabolic networks.
Pey J; Prada J; Beasley JE; Planes FJ
Genome Biol; 2011; 12(5):R49. PubMed ID: 21619601
[TBL] [Abstract][Full Text] [Related]
18. METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.
Gille C; Hoffmann S; Holzhütter HG
BMC Syst Biol; 2007 Jan; 1():5. PubMed ID: 17408512
[TBL] [Abstract][Full Text] [Related]
19. Numerical Matrices Method for nonlinear system identification and description of dynamics of biochemical reaction networks.
Karnaukhov AV; Karnaukhova EV; Williamson JR
Biophys J; 2007 May; 92(10):3459-73. PubMed ID: 17350997
[TBL] [Abstract][Full Text] [Related]
20. Approximate von Neumann entropy for directed graphs.
Ye C; Wilson RC; Comin CH; Costa Lda F; Hancock ER
Phys Rev E Stat Nonlin Soft Matter Phys; 2014 May; 89(5):052804. PubMed ID: 25353841
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
