281 related articles for article (PubMed ID: 27873270)
1. Analysis of EBV Transcription Using High-Throughput RNA Sequencing.
O'Grady T; Baddoo M; Flemington EK
Methods Mol Biol; 2017; 1532():105-121. PubMed ID: 27873270
[TBL] [Abstract][Full Text] [Related]
2. Accurate Quantification of Overlapping Herpesvirus Transcripts from RNA Sequencing Data.
Casco A; Gupta A; Hayes M; Djavadian R; Ohashi M; Johannsen E
J Virol; 2022 Jan; 96(2):e0163521. PubMed ID: 34705568
[TBL] [Abstract][Full Text] [Related]
3. Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
Djebali S; Wucher V; Foissac S; Hitte C; Corre E; Derrien T
Methods Mol Biol; 2017; 1468():201-19. PubMed ID: 27662878
[TBL] [Abstract][Full Text] [Related]
4. Analysis of RNA-Seq Data Using TopHat and Cufflinks.
Ghosh S; Chan CK
Methods Mol Biol; 2016; 1374():339-61. PubMed ID: 26519415
[TBL] [Abstract][Full Text] [Related]
5. Integrative profiling of Epstein-Barr virus transcriptome using a multiplatform approach.
Fülöp Á; Torma G; Moldován N; Szenthe K; Bánáti F; Almsarrhad IAA; Csabai Z; Tombácz D; Minárovits J; Boldogkői Z
Virol J; 2022 Jan; 19(1):7. PubMed ID: 34991630
[TBL] [Abstract][Full Text] [Related]
6. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
Johnson BK; Scholz MB; Teal TK; Abramovitch RB
BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
[TBL] [Abstract][Full Text] [Related]
7. Experimental Design and Power Calculation for RNA-seq Experiments.
Wu Z; Wu H
Methods Mol Biol; 2016; 1418():379-90. PubMed ID: 27008024
[TBL] [Abstract][Full Text] [Related]
8. RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets.
Xu G; Strong MJ; Lacey MR; Baribault C; Flemington EK; Taylor CM
PLoS One; 2014; 9(2):e89445. PubMed ID: 24586784
[TBL] [Abstract][Full Text] [Related]
9. De Novo Transcriptome Assembly in Polyploid Species.
Gutierrez-Gonzalez JJ; Garvin DF
Methods Mol Biol; 2017; 1536():209-221. PubMed ID: 28132153
[TBL] [Abstract][Full Text] [Related]
10. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ
Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781
[TBL] [Abstract][Full Text] [Related]
11. FLAME: long-read bioinformatics tool for comprehensive spliceome characterization.
Holmqvist I; Bäckerholm A; Tian Y; Xie G; Thorell K; Tang KW
RNA; 2021 Oct; 27(10):1127-1139. PubMed ID: 34253685
[TBL] [Abstract][Full Text] [Related]
12. Conduct and Quality Control of Differential Gene Expression Analysis Using High-Throughput Transcriptome Sequencing (RNASeq).
Grassmann F
Methods Mol Biol; 2019; 1834():29-43. PubMed ID: 30324434
[TBL] [Abstract][Full Text] [Related]
13. Comprehensive profiling of functional Epstein-Barr virus miRNA expression in human cell lines.
Hooykaas MJ; Kruse E; Wiertz EJ; Lebbink RJ
BMC Genomics; 2016 Aug; 17():644. PubMed ID: 27531524
[TBL] [Abstract][Full Text] [Related]
14. Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes.
Depledge DP; Mohr I; Wilson AC
J Virol; 2019 Jan; 93(1):. PubMed ID: 30305358
[TBL] [Abstract][Full Text] [Related]
15. Differential Expression and Functional Analysis of High-Throughput -Omics Data Using Open Source Tools.
Kebschull M; Fittler MJ; Demmer RT; Papapanou PN
Methods Mol Biol; 2017; 1537():327-345. PubMed ID: 27924603
[TBL] [Abstract][Full Text] [Related]
16. Bioinformatics Analysis of Small RNA Transcriptomes: The Detailed Workflow.
Ilnytskyy S; Bilichak A
Methods Mol Biol; 2017; 1456():197-224. PubMed ID: 27770368
[TBL] [Abstract][Full Text] [Related]
17. A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association.
Strong MJ; Blanchard E; Lin Z; Morris CA; Baddoo M; Taylor CM; Ware ML; Flemington EK
Acta Neuropathol Commun; 2016 Jul; 4(1):71. PubMed ID: 27402152
[TBL] [Abstract][Full Text] [Related]
18. Bridger: a new framework for de novo transcriptome assembly using RNA-seq data.
Chang Z; Li G; Liu J; Zhang Y; Ashby C; Liu D; Cramer CL; Huang X
Genome Biol; 2015 Feb; 16(1):30. PubMed ID: 25723335
[TBL] [Abstract][Full Text] [Related]
19. RNA-Seq for transcriptome analysis in non-model plants.
Garg R; Jain M
Methods Mol Biol; 2013; 1069():43-58. PubMed ID: 23996307
[TBL] [Abstract][Full Text] [Related]
20. Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures.
Pollier J; Rombauts S; Goossens A
Methods Mol Biol; 2013; 1011():305-15. PubMed ID: 23616006
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]