218 related articles for article (PubMed ID: 27879433)
1. Comparison of SHAPE reagents for mapping RNA structures inside living cells.
Lee B; Flynn RA; Kadina A; Guo JK; Kool ET; Chang HY
RNA; 2017 Feb; 23(2):169-174. PubMed ID: 27879433
[TBL] [Abstract][Full Text] [Related]
2. Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE.
Flynn RA; Zhang QC; Spitale RC; Lee B; Mumbach MR; Chang HY
Nat Protoc; 2016 Feb; 11(2):273-90. PubMed ID: 26766114
[TBL] [Abstract][Full Text] [Related]
3. Guidelines for SHAPE Reagent Choice and Detection Strategy for RNA Structure Probing Studies.
Busan S; Weidmann CA; Sengupta A; Weeks KM
Biochemistry; 2019 Jun; 58(23):2655-2664. PubMed ID: 31117385
[TBL] [Abstract][Full Text] [Related]
4. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
Watters KE; Lucks JB
Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
[TBL] [Abstract][Full Text] [Related]
5. Innately Water-Soluble Isatoic Anhydrides with Modulated Reactivities for RNA SHAPE Analysis.
Fessler AB; Dey A; Finis DS; Fowler AJ; Chakrabarti K; Ogle CA
Bioconjug Chem; 2020 Mar; 31(3):884-888. PubMed ID: 32039581
[TBL] [Abstract][Full Text] [Related]
6. Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).
Turner R; Shefer K; Ares M
RNA; 2013 Dec; 19(12):1857-63. PubMed ID: 24141619
[TBL] [Abstract][Full Text] [Related]
7. Facile synthesis and evaluation of a dual-functioning furoyl probe for in-cell SHAPE.
Chan D; Beasley S; Zhen Y; Spitale RC
Bioorg Med Chem Lett; 2018 Feb; 28(4):601-605. PubMed ID: 29398542
[TBL] [Abstract][Full Text] [Related]
8. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis.
Smola MJ; Rice GM; Busan S; Siegfried NA; Weeks KM
Nat Protoc; 2015 Nov; 10(11):1643-69. PubMed ID: 26426499
[TBL] [Abstract][Full Text] [Related]
9. Sequencing-based analysis of RNA structures in living cells with 2A3 via SHAPE-MaP.
Incarnato D
Methods Enzymol; 2023; 691():153-181. PubMed ID: 37914444
[TBL] [Abstract][Full Text] [Related]
10. A novel SHAPE reagent enables the analysis of RNA structure in living cells with unprecedented accuracy.
Marinus T; Fessler AB; Ogle CA; Incarnato D
Nucleic Acids Res; 2021 Apr; 49(6):e34. PubMed ID: 33398343
[TBL] [Abstract][Full Text] [Related]
11. SHAPE analysis of small RNAs and riboswitches.
Rice GM; Busan S; Karabiber F; Favorov OV; Weeks KM
Methods Enzymol; 2014; 549():165-87. PubMed ID: 25432749
[TBL] [Abstract][Full Text] [Related]
12. SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data.
Poulsen LD; Kielpinski LJ; Salama SR; Krogh A; Vinther J
RNA; 2015 May; 21(5):1042-52. PubMed ID: 25805860
[TBL] [Abstract][Full Text] [Related]
13. Measuring RNA structure transcriptome-wide with icSHAPE.
Chan D; Feng C; Spitale RC
Methods; 2017 May; 120():85-90. PubMed ID: 28336307
[TBL] [Abstract][Full Text] [Related]
14. Comparative Analysis Reveals Furoyl in Vivo Selective Hydroxyl Acylation Analyzed by Primer Extension Reagents Form Stable Ribosyl Ester Adducts.
Chan D; Feng C; Zhen Y; Flynn RA; Spitale RC
Biochemistry; 2017 Apr; 56(13):1811-1814. PubMed ID: 28319368
[TBL] [Abstract][Full Text] [Related]
15. Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP.
Christy TW; Giannetti CA; Houlihan G; Smola MJ; Rice GM; Wang J; Dokholyan NV; Laederach A; Holliger P; Weeks KM
Biochemistry; 2021 Jun; 60(25):1971-1982. PubMed ID: 34121404
[TBL] [Abstract][Full Text] [Related]
16. In-cell RNA structure probing with SHAPE-MaP.
Smola MJ; Weeks KM
Nat Protoc; 2018 Jun; 13(6):1181-1195. PubMed ID: 29725122
[TBL] [Abstract][Full Text] [Related]
17. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
[TBL] [Abstract][Full Text] [Related]
18. Assaying RNA Structure Inside Living Cells with SHAPE.
Feng C; Chan D; Spitale RC
Methods Mol Biol; 2017; 1648():247-256. PubMed ID: 28766302
[TBL] [Abstract][Full Text] [Related]
19. New windows into retroviral RNA structures.
Jayaraman D; Kenyon JC
Retrovirology; 2018 Jan; 15(1):11. PubMed ID: 29368653
[TBL] [Abstract][Full Text] [Related]
20. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA.
Steen KA; Siegfried NA; Weeks KM
Nat Protoc; 2011 Oct; 6(11):1683-94. PubMed ID: 21979276
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
