352 related articles for article (PubMed ID: 27884103)
1. ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons.
Scala G; Affinito O; Palumbo D; Florio E; Monticelli A; Miele G; Chiariotti L; Cocozza S
BMC Bioinformatics; 2016 Nov; 17(1):484. PubMed ID: 27884103
[TBL] [Abstract][Full Text] [Related]
2. DNA Methylation Profiling Using Long-Read Single Molecule Real-Time Bisulfite Sequencing (SMRT-BS).
Yang Y; Scott SA
Methods Mol Biol; 2017; 1654():125-134. PubMed ID: 28986786
[TBL] [Abstract][Full Text] [Related]
3. Locus-Specific DNA Methylation Analysis by Targeted Deep Bisulfite Sequencing.
Leitão E; Beygo J; Zeschnigk M; Klein-Hitpass L; Bargull M; Rahmann S; Horsthemke B
Methods Mol Biol; 2018; 1767():351-366. PubMed ID: 29524145
[TBL] [Abstract][Full Text] [Related]
4. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
[TBL] [Abstract][Full Text] [Related]
5. Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS).
Yang Y; Sebra R; Pullman BS; Qiao W; Peter I; Desnick RJ; Geyer CR; DeCoteau JF; Scott SA
BMC Genomics; 2015 May; 16(1):350. PubMed ID: 25943404
[TBL] [Abstract][Full Text] [Related]
6. Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.
Pabinger S; Ernst K; Pulverer W; Kallmeyer R; Valdes AM; Metrustry S; Katic D; Nuzzo A; Kriegner A; Vierlinger K; Weinhaeusel A
PLoS One; 2016; 11(7):e0160227. PubMed ID: 27467908
[TBL] [Abstract][Full Text] [Related]
7. MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.
Sun S; Noviski A; Yu X
BMC Bioinformatics; 2013 Aug; 14():259. PubMed ID: 23968174
[TBL] [Abstract][Full Text] [Related]
8. Methodological aspects of whole-genome bisulfite sequencing analysis.
Adusumalli S; Mohd Omar MF; Soong R; Benoukraf T
Brief Bioinform; 2015 May; 16(3):369-79. PubMed ID: 24867940
[TBL] [Abstract][Full Text] [Related]
9. BisAMP: A web-based pipeline for targeted RNA cytosine-5 methylation analysis.
Bormann F; Tuorto F; Cirzi C; Lyko F; Legrand C
Methods; 2019 Mar; 156():121-127. PubMed ID: 30366099
[TBL] [Abstract][Full Text] [Related]
10. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data.
Gaspar JM; Hart RP
BMC Bioinformatics; 2017 Nov; 18(1):528. PubMed ID: 29187143
[TBL] [Abstract][Full Text] [Related]
11. CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data.
Su J; Yan H; Wei Y; Liu H; Liu H; Wang F; Lv J; Wu Q; Zhang Y
Nucleic Acids Res; 2013 Jan; 41(1):e4. PubMed ID: 22941633
[TBL] [Abstract][Full Text] [Related]
12. Application of microdroplet PCR for large-scale targeted bisulfite sequencing.
Komori HK; LaMere SA; Torkamani A; Hart GT; Kotsopoulos S; Warner J; Samuels ML; Olson J; Head SR; Ordoukhanian P; Lee PL; Link DR; Salomon DR
Genome Res; 2011 Oct; 21(10):1738-45. PubMed ID: 21757609
[TBL] [Abstract][Full Text] [Related]
13. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
[TBL] [Abstract][Full Text] [Related]
14. Targeted bisulfite sequencing: A novel tool for the assessment of DNA methylation with high sensitivity and increased coverage.
Moser DA; Müller S; Hummel EM; Limberg AS; Dieckmann L; Frach L; Pakusch J; Flasbeck V; Brüne M; Beygo J; Klein-Hitpass L; Kumsta R
Psychoneuroendocrinology; 2020 Oct; 120():104784. PubMed ID: 32673938
[TBL] [Abstract][Full Text] [Related]
15. Targeted DNA methylation analysis by next-generation sequencing.
Masser DR; Stanford DR; Freeman WM
J Vis Exp; 2015 Feb; (96):. PubMed ID: 25741966
[TBL] [Abstract][Full Text] [Related]
16. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
Hu K; Ting AH; Li J
BMC Bioinformatics; 2015 Jul; 16():220. PubMed ID: 26163275
[TBL] [Abstract][Full Text] [Related]
17. Microdroplet PCR for Highly Multiplexed Targeted Bisulfite Sequencing.
Komori HK; LaMere SA; Hart T; Head SR; Torkamani A; Salomon DR
Methods Mol Biol; 2018; 1708():333-348. PubMed ID: 29224152
[TBL] [Abstract][Full Text] [Related]
18. Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis.
Sun Z; Cunningham J; Slager S; Kocher JP
Epigenomics; 2015 Aug; 7(5):813-28. PubMed ID: 26366945
[TBL] [Abstract][Full Text] [Related]
19. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
Prezza N; Vezzi F; Käller M; Policriti A
BMC Bioinformatics; 2016 Mar; 17 Suppl 4(Suppl 4):69. PubMed ID: 26961371
[TBL] [Abstract][Full Text] [Related]
20. MethyMer: Design of combinations of specific primers for bisulfite sequencing of complete CpG islands.
Krasnov GS; Melnikova NV; Lakunina VA; Snezhkina AV; Kudryavtseva AV; Dmitriev AA
J Bioinform Comput Biol; 2018 Feb; 16(1):1840004. PubMed ID: 29382254
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]