These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

389 related articles for article (PubMed ID: 27899584)

  • 1. CATH: an expanded resource to predict protein function through structure and sequence.
    Dawson NL; Lewis TE; Das S; Lees JG; Lee D; Ashford P; Orengo CA; Sillitoe I
    Nucleic Acids Res; 2017 Jan; 45(D1):D289-D295. PubMed ID: 27899584
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences.
    Dawson NL; Sillitoe I; Lees JG; Lam SD; Orengo CA
    Methods Mol Biol; 2017; 1558():79-110. PubMed ID: 28150234
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
    Greene LH; Lewis TE; Addou S; Cuff A; Dallman T; Dibley M; Redfern O; Pearl F; Nambudiry R; Reid A; Sillitoe I; Yeats C; Thornton JM; Orengo CA
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D291-7. PubMed ID: 17135200
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CATH: increased structural coverage of functional space.
    Sillitoe I; Bordin N; Dawson N; Waman VP; Ashford P; Scholes HM; Pang CSM; Woodridge L; Rauer C; Sen N; Abbasian M; Le Cornu S; Lam SD; Berka K; Varekova IH; Svobodova R; Lees J; Orengo CA
    Nucleic Acids Res; 2021 Jan; 49(D1):D266-D273. PubMed ID: 33237325
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CATH: comprehensive structural and functional annotations for genome sequences.
    Sillitoe I; Lewis TE; Cuff A; Das S; Ashford P; Dawson NL; Furnham N; Laskowski RA; Lee D; Lees JG; Lehtinen S; Studer RA; Thornton J; Orengo CA
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D376-81. PubMed ID: 25348408
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CATH: expanding the horizons of structure-based functional annotations for genome sequences.
    Sillitoe I; Dawson N; Lewis TE; Das S; Lees JG; Ashford P; Tolulope A; Scholes HM; Senatorov I; Bujan A; Ceballos Rodriguez-Conde F; Dowling B; Thornton J; Orengo CA
    Nucleic Acids Res; 2019 Jan; 47(D1):D280-D284. PubMed ID: 30398663
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
    Pearl F; Todd A; Sillitoe I; Dibley M; Redfern O; Lewis T; Bennett C; Marsden R; Grant A; Lee D; Akpor A; Maibaum M; Harrison A; Dallman T; Reeves G; Diboun I; Addou S; Lise S; Johnston C; Sillero A; Thornton J; Orengo C
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D247-51. PubMed ID: 15608188
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
    Das S; Lee D; Sillitoe I; Dawson NL; Lees JG; Orengo CA
    Bioinformatics; 2015 Nov; 31(21):3460-7. PubMed ID: 26139634
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins.
    Sillitoe I; Lewis T; Orengo C
    Curr Protoc Bioinformatics; 2015 Jun; 50():1.28.1-1.28.21. PubMed ID: 26087950
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A rapid classification protocol for the CATH Domain Database to support structural genomics.
    Pearl FM; Martin N; Bray JE; Buchan DW; Harrison AP; Lee D; Reeves GA; Shepherd AJ; Sillitoe I; Todd AE; Thornton JM; Orengo CA
    Nucleic Acids Res; 2001 Jan; 29(1):223-7. PubMed ID: 11125098
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.
    Cuff AL; Sillitoe I; Lewis T; Redfern OC; Garratt R; Thornton J; Orengo CA
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D310-4. PubMed ID: 18996897
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CATH 2024: CATH-AlphaFlow Doubles the Number of Structures in CATH and Reveals Nearly 200 New Folds.
    Waman VP; Bordin N; Alcraft R; Vickerstaff R; Rauer C; Chan Q; Sillitoe I; Yamamori H; Orengo C
    J Mol Biol; 2024 Sep; 436(17):168551. PubMed ID: 38548261
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Gene3D: Extensive prediction of globular domains in proteins.
    Lewis TE; Sillitoe I; Dawson N; Lam SD; Clarke T; Lee D; Orengo C; Lees J
    Nucleic Acids Res; 2018 Jan; 46(D1):D435-D439. PubMed ID: 29112716
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Gene3D: expanding the utility of domain assignments.
    Lam SD; Dawson NL; Das S; Sillitoe I; Ashford P; Lee D; Lehtinen S; Orengo CA; Lees JG
    Nucleic Acids Res; 2016 Jan; 44(D1):D404-9. PubMed ID: 26578585
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The CATH database: an extended protein family resource for structural and functional genomics.
    Pearl FM; Bennett CF; Bray JE; Harrison AP; Martin N; Shepherd A; Sillitoe I; Thornton J; Orengo CA
    Nucleic Acids Res; 2003 Jan; 31(1):452-5. PubMed ID: 12520050
    [TBL] [Abstract][Full Text] [Related]  

  • 16. New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
    Sillitoe I; Cuff AL; Dessailly BH; Dawson NL; Furnham N; Lee D; Lees JG; Lewis TE; Studer RA; Rentzsch R; Yeats C; Thornton JM; Orengo CA
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D490-8. PubMed ID: 23203873
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
    Cuff AL; Sillitoe I; Lewis T; Clegg AB; Rentzsch R; Furnham N; Pellegrini-Calace M; Jones D; Thornton J; Orengo CA
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D420-6. PubMed ID: 21097779
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Gene3D: structural assignments for the biologist and bioinformaticist alike.
    Buchan DW; Rison SC; Bray JE; Lee D; Pearl F; Thornton JM; Orengo CA
    Nucleic Acids Res; 2003 Jan; 31(1):469-73. PubMed ID: 12520054
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An integrated approach to the interpretation of single amino acid polymorphisms within the framework of CATH and Gene3D.
    Izarzugaza JM; Baresic A; McMillan LE; Yeats C; Clegg AB; Orengo CA; Martin AC; Valencia A
    BMC Bioinformatics; 2009 Aug; 10 Suppl 8(Suppl 8):S5. PubMed ID: 19758469
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A; Pugalenthi G; Sowdhamini R
    BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.