BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 27905885)

  • 1. MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.
    Parikh HI; Koparde VN; Bradley SP; Buck GA; Sheth NU
    BMC Bioinformatics; 2016 Dec; 17(1):491. PubMed ID: 27905885
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing.
    Kwon S; Lee B; Yoon S
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S10. PubMed ID: 25252785
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples.
    Buetas E; Jordán-López M; López-Roldán A; D'Auria G; Martínez-Priego L; De Marco G; Carda-Diéguez M; Mira A
    BMC Genomics; 2024 Mar; 25(1):310. PubMed ID: 38528457
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparing DNA isolation and sequencing strategies for 16S rRNA gene amplicon analysis in biofilm containing environments.
    Cakin I; Morrissey B; Gordon M; Gaffney PPJ; Marcello L; Macgregor K; Taggart MA
    J Microbiol Methods; 2024 May; 220():106921. PubMed ID: 38494090
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Ultra-accurate microbial amplicon sequencing with synthetic long reads.
    Callahan BJ; Grinevich D; Thakur S; Balamotis MA; Yehezkel TB
    Microbiome; 2021 Jun; 9(1):130. PubMed ID: 34090540
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Microbiome depiction through user-adapted bioinformatic pipelines and parameters.
    Nayman EI; Schwartz BA; Polanco FC; Firek AK; Gumabong AC; Hofstee NJ; Narasimhan G; Cickovski T; Mathee K
    J Med Microbiol; 2023 Oct; 72(10):. PubMed ID: 37823280
    [No Abstract]   [Full Text] [Related]  

  • 7. Systematic processing of ribosomal RNA gene amplicon sequencing data.
    Tremblay J; Yergeau E
    Gigascience; 2019 Dec; 8(12):. PubMed ID: 31816087
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp.
    Dong X; Kleiner M; Sharp CE; Thorson E; Li C; Liu D; Strous M
    Front Microbiol; 2017; 8():1461. PubMed ID: 28824589
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Merging and concatenation of sequencing reads: a bioinformatics workflow for the comprehensive profiling of microbiome from amplicon data.
    Ramakodi MP
    FEMS Microbiol Lett; 2024 Jan; 371():. PubMed ID: 38305133
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.
    Bokulich NA; Subramanian S; Faith JJ; Gevers D; Gordon JI; Knight R; Mills DA; Caporaso JG
    Nat Methods; 2013 Jan; 10(1):57-9. PubMed ID: 23202435
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing.
    Clement K; Farouni R; Bauer DE; Pinello L
    Bioinformatics; 2018 Jul; 34(13):i202-i210. PubMed ID: 29949956
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mock microbial community meta-analysis using different trimming of amplicon read lengths.
    Haider D; Hall MW; LaRoche J; Beiko RG
    Environ Microbiol; 2024 Jan; 26(1):e16566. PubMed ID: 38149467
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Benchmarking MicrobIEM - a user-friendly tool for decontamination of microbiome sequencing data.
    Hülpüsch C; Rauer L; Nussbaumer T; Schwierzeck V; Bhattacharyya M; Erhart V; Traidl-Hoffmann C; Reiger M; Neumann AU
    BMC Biol; 2023 Nov; 21(1):269. PubMed ID: 37996810
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform.
    Larin AK; Klimina KM; Veselovsky VA; Olekhnovich EI; Morozov MD; Boldyreva DI; Yunes RA; Manolov AI; Fedorov DE; Pavlenko AV; Galeeva YS; Starikova EV; Ilina EN
    BMC Genom Data; 2024 Jan; 25(1):8. PubMed ID: 38254005
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genetic Diversity Assessment in Plants from Reduced Representation Sequencing Data.
    Jiménez-Madrigal JP; Till BJ; Gatica-Arias A
    Methods Mol Biol; 2024; 2787():107-122. PubMed ID: 38656485
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly.
    Hu T; Chen J; Lin X; He W; Liang H; Wang M; Li W; Wu Z; Han M; Jin X; Kristiansen K; Xiao L; Zou Y
    Sci Rep; 2024 Jan; 14(1):1292. PubMed ID: 38221534
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluating the diagnostic accuracy and clinical utility of 16S and 18S rRNA gene targeted next-generation sequencing based on five years of clinical experience.
    Poulsen SH; Søgaard KK; Fuursted K; Nielsen HL
    Infect Dis (Lond); 2023 Nov; 55(11):767-775. PubMed ID: 37535652
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HoCoRT: host contamination removal tool.
    Rumbavicius I; Rounge TB; Rognes T
    BMC Bioinformatics; 2023 Oct; 24(1):371. PubMed ID: 37784008
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Long-read amplicon denoising.
    Kumar V; Vollbrecht T; Chernyshev M; Mohan S; Hanst B; Bavafa N; Lorenzo A; Kumar N; Ketteringham R; Eren K; Golden M; Oliveira MF; Murrell B
    Nucleic Acids Res; 2019 Oct; 47(18):e104. PubMed ID: 31418021
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DISCo-microbe: design of an identifiable synthetic community of microbes.
    Carper DL; Lawrence TJ; Carrell AA; Pelletier DA; Weston DJ
    PeerJ; 2020; 8():e8534. PubMed ID: 32149021
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.