BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

330 related articles for article (PubMed ID: 27924593)

  • 1. Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package.
    Lawley B; Tannock GW
    Methods Mol Biol; 2017; 1537():153-163. PubMed ID: 27924593
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
    Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
    Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
    Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
    BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
    [TBL] [Abstract][Full Text] [Related]  

  • 4. 16S rRNA Gene Analysis with QIIME2.
    Hall M; Beiko RG
    Methods Mol Biol; 2018; 1849():113-129. PubMed ID: 30298251
    [TBL] [Abstract][Full Text] [Related]  

  • 5. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
    Mysara M; Njima M; Leys N; Raes J; Monsieurs P
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Visualizing Patterns of Marine Eukaryotic Diversity from Metabarcoding Data Using QIIME.
    Leray M; Knowlton N
    Methods Mol Biol; 2016; 1452():219-35. PubMed ID: 27460381
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
    Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
    Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
    [TBL] [Abstract][Full Text] [Related]  

  • 8. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data.
    Mysara M; Leys N; Raes J; Monsieurs P
    BMC Bioinformatics; 2016 Apr; 17(1):192. PubMed ID: 27130479
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Microbial community profiling of fresh basil and pitfalls in taxonomic assignment of enterobacterial pathogenic species based upon 16S rRNA amplicon sequencing.
    Ceuppens S; De Coninck D; Bottledoorn N; Van Nieuwerburgh F; Uyttendaele M
    Int J Food Microbiol; 2017 Sep; 257():148-156. PubMed ID: 28666129
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
    Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
    BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.
    Whelan FJ; Surette MG
    Microbiome; 2017 Aug; 5(1):100. PubMed ID: 28807046
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
    de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
    Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform.
    Jeon YS; Park SC; Lim J; Chun J; Kim BS
    J Microbiol; 2015 Jan; 53(1):60-9. PubMed ID: 25557481
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface.
    Soh J; Dong X; Caffrey SM; Voordouw G; Sensen CW
    J Biotechnol; 2013 Sep; 167(4):393-403. PubMed ID: 23871656
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
    Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
    Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
    [TBL] [Abstract][Full Text] [Related]  

  • 18. e-DNA meta-barcoding: from NGS raw data to taxonomic profiling.
    Bruno F; Marinella M; Santamaria M
    Methods Mol Biol; 2015; 1269():257-78. PubMed ID: 25577384
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing.
    Prodan A; Tremaroli V; Brolin H; Zwinderman AH; Nieuwdorp M; Levin E
    PLoS One; 2020; 15(1):e0227434. PubMed ID: 31945086
    [TBL] [Abstract][Full Text] [Related]  

  • 20. LotuS: an efficient and user-friendly OTU processing pipeline.
    Hildebrand F; Tadeo R; Voigt AY; Bork P; Raes J
    Microbiome; 2014 Sep; 2(1):30. PubMed ID: 27367037
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.