494 related articles for article (PubMed ID: 27991903)
21. Distinguishing preferences of human APOBEC3A and APOBEC3B for cytosines in hairpin loops, and reflection of these preferences in APOBEC-signature cancer genome mutations.
Butt Y; Sakhtemani R; Mohamad-Ramshan R; Lawrence MS; Bhagwat AS
Nat Commun; 2024 Mar; 15(1):2369. PubMed ID: 38499553
[TBL] [Abstract][Full Text] [Related]
22. Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing.
Sakhtemani R; Senevirathne V; Stewart J; Perera MLW; Pique-Regi R; Lawrence MS; Bhagwat AS
J Biol Chem; 2019 Oct; 294(41):15037-15051. PubMed ID: 31431505
[TBL] [Abstract][Full Text] [Related]
23. The ssDNA Mutator APOBEC3A Is Regulated by Cooperative Dimerization.
Bohn MF; Shandilya SMD; Silvas TV; Nalivaika EA; Kouno T; Kelch BA; Ryder SP; Kurt-Yilmaz N; Somasundaran M; Schiffer CA
Structure; 2015 May; 23(5):903-911. PubMed ID: 25914058
[TBL] [Abstract][Full Text] [Related]
24. Structural determinants of APOBEC3B non-catalytic domain for molecular assembly and catalytic regulation.
Xiao X; Yang H; Arutiunian V; Fang Y; Besse G; Morimoto C; Zirkle B; Chen XS
Nucleic Acids Res; 2017 Jul; 45(12):7494-7506. PubMed ID: 28575276
[TBL] [Abstract][Full Text] [Related]
25. Molecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNA.
Fang Y; Xiao X; Li SX; Wolfe A; Chen XS
J Mol Biol; 2018 Jan; 430(1):87-101. PubMed ID: 29191651
[TBL] [Abstract][Full Text] [Related]
26. Single-stranded DNA scanning and deamination by APOBEC3G cytidine deaminase at single molecule resolution.
Senavirathne G; Jaszczur M; Auerbach PA; Upton TG; Chelico L; Goodman MF; Rueda D
J Biol Chem; 2012 May; 287(19):15826-35. PubMed ID: 22362763
[TBL] [Abstract][Full Text] [Related]
27. In vitro deamination of cytosine to uracil in single-stranded DNA by apolipoprotein B editing complex catalytic subunit 1 (APOBEC1).
Petersen-Mahrt SK; Neuberger MS
J Biol Chem; 2003 May; 278(22):19583-6. PubMed ID: 12697753
[TBL] [Abstract][Full Text] [Related]
28. Evaluation of APOBEC3B Recognition Motifs by NMR Reveals Preferred Substrates.
Liu M; Mallinger A; Tortorici M; Newbatt Y; Richards M; Mirza A; van Montfort RLM; Burke R; Blagg J; Kaserer T
ACS Chem Biol; 2018 Sep; 13(9):2427-2432. PubMed ID: 30130388
[TBL] [Abstract][Full Text] [Related]
29. Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications.
Holden LG; Prochnow C; Chang YP; Bransteitter R; Chelico L; Sen U; Stevens RC; Goodman MF; Chen XS
Nature; 2008 Nov; 456(7218):121-4. PubMed ID: 18849968
[TBL] [Abstract][Full Text] [Related]
30. An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers.
Chan K; Roberts SA; Klimczak LJ; Sterling JF; Saini N; Malc EP; Kim J; Kwiatkowski DJ; Fargo DC; Mieczkowski PA; Getz G; Gordenin DA
Nat Genet; 2015 Sep; 47(9):1067-72. PubMed ID: 26258849
[TBL] [Abstract][Full Text] [Related]
31. Mutational impact of APOBEC3A and APOBEC3B in a human cell line and comparisons to breast cancer.
Carpenter MA; Temiz NA; Ibrahim MA; Jarvis MC; Brown MR; Argyris PP; Brown WL; Starrett GJ; Yee D; Harris RS
PLoS Genet; 2023 Nov; 19(11):e1011043. PubMed ID: 38033156
[TBL] [Abstract][Full Text] [Related]
32. Deamination hotspots among APOBEC3 family members are defined by both target site sequence context and ssDNA secondary structure.
McDaniel YZ; Wang D; Love RP; Adolph MB; Mohammadzadeh N; Chelico L; Mansky LM
Nucleic Acids Res; 2020 Feb; 48(3):1353-1371. PubMed ID: 31943071
[TBL] [Abstract][Full Text] [Related]
33. APOBEC3G cytosine deamination hotspots are defined by both sequence context and single-stranded DNA secondary structure.
Holtz CM; Sadler HA; Mansky LM
Nucleic Acids Res; 2013 Jul; 41(12):6139-48. PubMed ID: 23620282
[TBL] [Abstract][Full Text] [Related]
34. Family-Wide Comparative Analysis of Cytidine and Methylcytidine Deamination by Eleven Human APOBEC Proteins.
Ito F; Fu Y; Kao SA; Yang H; Chen XS
J Mol Biol; 2017 Jun; 429(12):1787-1799. PubMed ID: 28479091
[TBL] [Abstract][Full Text] [Related]
35. Crystal structure of DNA cytidine deaminase ABOBEC3G catalytic deamination domain suggests a binding mode of full-length enzyme to single-stranded DNA.
Lu X; Zhang T; Xu Z; Liu S; Zhao B; Lan W; Wang C; Ding J; Cao C
J Biol Chem; 2015 Feb; 290(7):4010-21. PubMed ID: 25542899
[TBL] [Abstract][Full Text] [Related]
36. Inhibiting APOBEC3 Activity with Single-Stranded DNA Containing 2'-Deoxyzebularine Analogues.
Kvach MV; Barzak FM; Harjes S; Schares HAM; Jameson GB; Ayoub AM; Moorthy R; Aihara H; Harris RS; Filichev VV; Harki DA; Harjes E
Biochemistry; 2019 Feb; 58(5):391-400. PubMed ID: 30418757
[TBL] [Abstract][Full Text] [Related]
37. AID, APOBEC3A and APOBEC3B efficiently deaminate deoxycytidines neighboring DNA damage induced by oxidation or alkylation.
Diamond CP; Im J; Button EA; Huebert DNG; King JJ; Borzooee F; Abdouni HS; Bacque L; McCarthy E; Fifield H; Berghuis LM; Larijani M
Biochim Biophys Acta Gen Subj; 2019 Nov; 1863(11):129415. PubMed ID: 31404619
[TBL] [Abstract][Full Text] [Related]
38. Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains.
Maiti A; Myint W; Delviks-Frankenberry KA; Hou S; Kanai T; Balachandran V; Sierra Rodriguez C; Tripathi R; Kurt Yilmaz N; Pathak VK; Schiffer CA; Matsuo H
J Mol Biol; 2020 Nov; 432(23):6042-6060. PubMed ID: 33098858
[TBL] [Abstract][Full Text] [Related]
39. APOBEC3A Loop 1 Is a Determinant for Single-Stranded DNA Binding and Deamination.
Ziegler SJ; Hu Y; Devarkar SC; Xiong Y
Biochemistry; 2019 Sep; 58(37):3838-3847. PubMed ID: 31448897
[TBL] [Abstract][Full Text] [Related]
40. Dissecting APOBEC3G substrate specificity by nucleoside analog interference.
Rausch JW; Chelico L; Goodman MF; Le Grice SF
J Biol Chem; 2009 Mar; 284(11):7047-58. PubMed ID: 19136562
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
