These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks. Tian Y; Zhang B; Hoffman EP; Clarke R; Zhang Z; Shih IeM; Xuan J; Herrington DM; Wang Y BMC Syst Biol; 2014 Jul; 8():87. PubMed ID: 25055984 [TBL] [Abstract][Full Text] [Related]
5. A simple null model for inferences from network enrichment analysis. Jeuken GS; Käll L PLoS One; 2018; 13(11):e0206864. PubMed ID: 30412619 [TBL] [Abstract][Full Text] [Related]
6. Network stratification analysis for identifying function-specific network layers. Zhang C; Wang J; Zhang C; Liu J; Xu D; Chen L Mol Biosyst; 2016 Apr; 12(4):1232-40. PubMed ID: 26879865 [TBL] [Abstract][Full Text] [Related]
7. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool. Gysi DM; Voigt A; Fragoso TM; Almaas E; Nowick K BMC Bioinformatics; 2018 Oct; 19(1):392. PubMed ID: 30355288 [TBL] [Abstract][Full Text] [Related]
8. Biological Network Inference and analysis using SEBINI and CABIN. Taylor R; Singhal M Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531 [TBL] [Abstract][Full Text] [Related]
9. Efficient Detection of Communities in Biological Bipartite Networks. Pesantez-Cabrera P; Kalyanaraman A IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(1):258-271. PubMed ID: 29990252 [TBL] [Abstract][Full Text] [Related]
10. ndexr-an R package to interface with the network data exchange. Auer F; Hammoud Z; Ishkin A; Pratt D; Ideker T; Kramer F Bioinformatics; 2018 Feb; 34(4):716-717. PubMed ID: 29087446 [TBL] [Abstract][Full Text] [Related]
11. A multi-objective genetic algorithm to find active modules in multiplex biological networks. Novoa-Del-Toro EM; Mezura-Montes E; Vignes M; Térézol M; Magdinier F; Tichit L; Baudot A PLoS Comput Biol; 2021 Aug; 17(8):e1009263. PubMed ID: 34460810 [TBL] [Abstract][Full Text] [Related]
12. Reverse engineering molecular regulatory networks from microarray data with qp-graphs. Castelo R; Roverato A J Comput Biol; 2009 Feb; 16(2):213-27. PubMed ID: 19178140 [TBL] [Abstract][Full Text] [Related]
13. iDINGO-integrative differential network analysis in genomics with Shiny application. Class CA; Ha MJ; Baladandayuthapani V; Do KA Bioinformatics; 2018 Apr; 34(7):1243-1245. PubMed ID: 29194470 [TBL] [Abstract][Full Text] [Related]
14. Path2enet: generation of human pathway-derived networks in an expression specific context. Droste C; De Las Rivas J BMC Genomics; 2016 Oct; 17(Suppl 8):731. PubMed ID: 27801297 [TBL] [Abstract][Full Text] [Related]
15. A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification. Guo WF; Zhang SW; Shi QQ; Zhang CM; Zeng T; Chen L BMC Genomics; 2018 Jan; 19(Suppl 1):924. PubMed ID: 29363426 [TBL] [Abstract][Full Text] [Related]
16. RESQUE: network reduction using semi-Markov random walk scores for efficient querying of biological networks. Sahraeian SM; Yoon BJ Bioinformatics; 2012 Aug; 28(16):2129-36. PubMed ID: 22730436 [TBL] [Abstract][Full Text] [Related]