These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 27999116)

  • 1. Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops.
    D'Ascenzo L; Leonarski F; Vicens Q; Auffinger P
    RNA; 2017 Mar; 23(3):259-269. PubMed ID: 27999116
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Mapping the Universe of RNA Tetraloop Folds.
    Bottaro S; Lindorff-Larsen K
    Biophys J; 2017 Jul; 113(2):257-267. PubMed ID: 28673616
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identification of receptors for UNCG and GNRA Z-turns and their occurrence in rRNA.
    D'Ascenzo L; Vicens Q; Auffinger P
    Nucleic Acids Res; 2018 Sep; 46(15):7989-7997. PubMed ID: 29986118
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Conformational adaptation of UNCG loops upon crowding.
    Meyer M; Walbott H; Oliéric V; Kondo J; Costa M; Masquida B
    RNA; 2019 Nov; 25(11):1522-1531. PubMed ID: 31427457
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns.
    Klosterman PS; Hendrix DK; Tamura M; Holbrook SR; Brenner SE
    Nucleic Acids Res; 2004; 32(8):2342-52. PubMed ID: 15121895
    [TBL] [Abstract][Full Text] [Related]  

  • 6. UNAC tetraloops: to what extent do they mimic GNRA tetraloops?
    Zhao Q; Huang HC; Nagaswamy U; Xia Y; Gao X; Fox GE
    Biopolymers; 2012 Aug; 97(8):617-28. PubMed ID: 22605553
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The application of cluster analysis in the intercomparison of loop structures in RNA.
    Huang HC; Nagaswamy U; Fox GE
    RNA; 2005 Apr; 11(4):412-23. PubMed ID: 15769871
    [TBL] [Abstract][Full Text] [Related]  

  • 8. 'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.
    D'Ascenzo L; Leonarski F; Vicens Q; Auffinger P
    Nucleic Acids Res; 2016 Jul; 44(12):5944-56. PubMed ID: 27151194
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural organization of a viral IRES depends on the integrity of the GNRA motif.
    Fernández-Miragall O; Martínez-Salas E
    RNA; 2003 Nov; 9(11):1333-44. PubMed ID: 14561883
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins.
    Thapar R; Denmon AP; Nikonowicz EP
    Wiley Interdiscip Rev RNA; 2014; 5(1):49-67. PubMed ID: 24124096
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Portability of the GN(R)A hairpin loop motif between RNA and DNA.
    Blose JM; Lloyd KP; Bevilacqua PC
    Biochemistry; 2009 Sep; 48(37):8787-94. PubMed ID: 19681609
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Unusual nucleotide conformations in GNRA and UNCG type tetraloop hairpins: evidence from Raman markers assignments.
    Leulliot N; Baumruk V; Abdelkafi M; Turpin PY; Namane A; Gouyette C; Huynh-Dinh T; Ghomi M
    Nucleic Acids Res; 1999 Mar; 27(5):1398-404. PubMed ID: 9973632
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GNRA tetraloops make a U-turn.
    Jucker FM; Pardi A
    RNA; 1995 Apr; 1(2):219-22. PubMed ID: 7585251
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computer Folding of RNA Tetraloops? Are We There Yet?
    Kührová P; Banáš P; Best RB; Šponer J; Otyepka M
    J Chem Theory Comput; 2013 Apr; 9(4):2115-25. PubMed ID: 26583558
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Lone Pair…π Contacts and Structure Signatures of r(UNCG) Tetraloops, Z-Turns, and Z-Steps: A WebFR3D Survey.
    Zirbel CL; Auffinger P
    Molecules; 2022 Jul; 27(14):. PubMed ID: 35889236
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An RNA folding motif: GNRA tetraloop-receptor interactions.
    Fiore JL; Nesbitt DJ
    Q Rev Biophys; 2013 Aug; 46(3):223-64. PubMed ID: 23915736
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation.
    Mukherjee D; Bhattacharyya D
    J Mol Model; 2017 Sep; 23(10):300. PubMed ID: 28965269
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evidence of reciprocal tertiary interactions between conserved motifs involved in organizing RNA structure essential for internal initiation of translation.
    Fernández-Miragall O; Ramos R; Ramajo J; Martínez-Salas E
    RNA; 2006 Feb; 12(2):223-34. PubMed ID: 16373480
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Insights into Stability and Folding of GNRA and UNCG Tetraloops Revealed by Microsecond Molecular Dynamics and Well-Tempered Metadynamics.
    Haldar S; Kührová P; Banáš P; Spiwok V; Šponer J; Hobza P; Otyepka M
    J Chem Theory Comput; 2015 Aug; 11(8):3866-77. PubMed ID: 26574468
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An in vitro-selected RNA receptor for the GAAC loop: modular receptor for non-GNRA-type tetraloop.
    Ishikawa J; Furuta H; Ikawa Y
    Nucleic Acids Res; 2013 Apr; 41(6):3748-59. PubMed ID: 23382175
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.