These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

149 related articles for article (PubMed ID: 28000438)

  • 1. Gogadget: An R Package for Interpretation and Visualization of GO Enrichment Results.
    Nota B
    Mol Inform; 2017 May; 36(5-6):. PubMed ID: 28000438
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions.
    Wang G; Oh DH; Dassanayake M
    BMC Bioinformatics; 2020 Apr; 21(1):139. PubMed ID: 32272889
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GOTrapper: a tool to navigate through branches of gene ontology hierarchy.
    Hassan H; Shanak S
    BMC Bioinformatics; 2019 Jan; 20(1):20. PubMed ID: 30634902
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GOATOOLS: A Python library for Gene Ontology analyses.
    Klopfenstein DV; Zhang L; Pedersen BS; Ramírez F; Warwick Vesztrocy A; Naldi A; Mungall CJ; Yunes JM; Botvinnik O; Weigel M; Dampier W; Dessimoz C; Flick P; Tang H
    Sci Rep; 2018 Jul; 8(1):10872. PubMed ID: 30022098
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis.
    Sun D; Liu Y; Zhang XS; Wu LY
    BMC Syst Biol; 2017 Sep; 11(Suppl 4):75. PubMed ID: 28950861
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Using Semantic Similarities and csbl.go for Analyzing Microarray Data.
    Ovaska K
    Methods Mol Biol; 2016; 1375():105-16. PubMed ID: 25971911
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Visualizing GO Annotations.
    Supek F; Škunca N
    Methods Mol Biol; 2017; 1446():207-220. PubMed ID: 27812945
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.
    Zhong S; Xie D
    Artif Intell Med; 2007 Oct; 41(2):105-15. PubMed ID: 17913480
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GOAT: efficient and robust identification of gene set enrichment.
    Koopmans F
    Commun Biol; 2024 Jun; 7(1):744. PubMed ID: 38898151
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments.
    Waardenberg AJ; Basset SD; Bouveret R; Harvey RP
    BMC Bioinformatics; 2015 Sep; 16():275. PubMed ID: 26329719
    [TBL] [Abstract][Full Text] [Related]  

  • 11. orsum: a Python package for filtering and comparing enrichment analyses using a simple principle.
    Ozisik O; Térézol M; Baudot A
    BMC Bioinformatics; 2022 Jul; 23(1):293. PubMed ID: 35870894
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection display.
    Stamm K; Tomita-Mitchell A; Bozdag S
    BMC Bioinformatics; 2019 Mar; 20(1):115. PubMed ID: 30841846
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GOplot: an R package for visually combining expression data with functional analysis.
    Walter W; Sánchez-Cabo F; Ricote M
    Bioinformatics; 2015 Sep; 31(17):2912-4. PubMed ID: 25964631
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computing and Visualizing Gene Function Similarity and Coherence with NaviGO.
    Ding Z; Wei Q; Kihara D
    Methods Mol Biol; 2018; 1807():113-130. PubMed ID: 30030807
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GOurmet: a tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions.
    Doherty JM; Carmichael LK; Mills JC
    BMC Bioinformatics; 2006 Mar; 7():151. PubMed ID: 16545118
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data.
    Rue-Albrecht K; McGettigan PA; Hernández B; Nalpas NC; Magee DA; Parnell AC; Gordon SV; MacHugh DE
    BMC Bioinformatics; 2016 Mar; 17():126. PubMed ID: 26968614
    [TBL] [Abstract][Full Text] [Related]  

  • 17. goSTAG: gene ontology subtrees to tag and annotate genes within a set.
    Bennett BD; Bushel PR
    Source Code Biol Med; 2017; 12():6. PubMed ID: 28413437
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GOSemSim: an R package for measuring semantic similarity among GO terms and gene products.
    Yu G; Li F; Qin Y; Bo X; Wu Y; Wang S
    Bioinformatics; 2010 Apr; 26(7):976-8. PubMed ID: 20179076
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MonaGO: a novel gene ontology enrichment analysis visualisation system.
    Xin Z; Cai Y; Dang LT; Burke HMS; Revote J; Charitakis N; Bienroth D; Nim HT; Li YF; Ramialison M
    BMC Bioinformatics; 2022 Feb; 23(1):69. PubMed ID: 35164667
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Gene Ontology Enrichment Improves Performances of Functional Similarity of Genes.
    Liu W; Liu J; Rajapakse JC
    Sci Rep; 2018 Aug; 8(1):12100. PubMed ID: 30108262
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.