170 related articles for article (PubMed ID: 28004051)
1. Replica exchange molecular dynamics study of the truncated amyloid beta (11-40) trimer in solution.
Ngo ST; Hung HM; Truong DT; Nguyen MT
Phys Chem Chem Phys; 2017 Jan; 19(3):1909-1919. PubMed ID: 28004051
[TBL] [Abstract][Full Text] [Related]
2. Aβ monomers transiently sample oligomer and fibril-like configurations: ensemble characterization using a combined MD/NMR approach.
Rosenman DJ; Connors CR; Chen W; Wang C; García AE
J Mol Biol; 2013 Sep; 425(18):3338-59. PubMed ID: 23811057
[TBL] [Abstract][Full Text] [Related]
3. The influences of E22Q mutant on solvated 3Aβ
Ngo ST; Hung HM; Hong ND; Tung NT
J Mol Graph Model; 2018 Aug; 83():122-128. PubMed ID: 29902674
[TBL] [Abstract][Full Text] [Related]
4. Oligomer Formation of Amyloid-β(29-42) from Its Monomers Using the Hamiltonian Replica-Permutation Molecular Dynamics Simulation.
Itoh SG; Okumura H
J Phys Chem B; 2016 Jul; 120(27):6555-61. PubMed ID: 27281682
[TBL] [Abstract][Full Text] [Related]
5. Effects of force fields on the conformational and dynamic properties of amyloid β(1-40) dimer explored by replica exchange molecular dynamics simulations.
Watts CR; Gregory A; Frisbie C; Lovas S
Proteins; 2018 Mar; 86(3):279-300. PubMed ID: 29235155
[TBL] [Abstract][Full Text] [Related]
6. Structural properties of amyloid β(1-40) dimer explored by replica exchange molecular dynamics simulations.
Watts CR; Gregory AJ; Frisbie CP; Lovas S
Proteins; 2017 Jun; 85(6):1024-1045. PubMed ID: 28241387
[TBL] [Abstract][Full Text] [Related]
7. An α-helix mimetic oligopyridylamide, ADH-31, modulates Aβ
Kaur A; Goyal D; Goyal B
Phys Chem Chem Phys; 2020 Dec; 22(48):28055-28073. PubMed ID: 33289734
[TBL] [Abstract][Full Text] [Related]
8. Energetic contributions of residues to the formation of early amyloid-β oligomers.
Pouplana R; Campanera JM
Phys Chem Chem Phys; 2015 Jan; 17(4):2823-37. PubMed ID: 25503571
[TBL] [Abstract][Full Text] [Related]
9. Structure of the 21-30 fragment of amyloid beta-protein.
Baumketner A; Bernstein SL; Wyttenbach T; Lazo ND; Teplow DB; Bowers MT; Shea JE
Protein Sci; 2006 Jun; 15(6):1239-47. PubMed ID: 16731963
[TBL] [Abstract][Full Text] [Related]
10. The inhibitory mechanism of a fullerene derivative against amyloid-β peptide aggregation: an atomistic simulation study.
Sun Y; Qian Z; Wei G
Phys Chem Chem Phys; 2016 May; 18(18):12582-91. PubMed ID: 27091578
[TBL] [Abstract][Full Text] [Related]
11. Effect of Taiwan mutation (D7H) on structures of amyloid-β peptides: replica exchange molecular dynamics study.
Truong PM; Viet MH; Nguyen PH; Hu CK; Li MS
J Phys Chem B; 2014 Jul; 118(30):8972-81. PubMed ID: 25010208
[TBL] [Abstract][Full Text] [Related]
12. Atomic-level study of the effects of O4 molecules on the structural properties of protofibrillar Aβ trimer: β-sheet stabilization, salt bridge protection, and binding mechanism.
Sun Y; Xi W; Wei G
J Phys Chem B; 2015 Feb; 119(7):2786-94. PubMed ID: 25608630
[TBL] [Abstract][Full Text] [Related]
13. Molecular dynamics simulations to investigate the aggregation behaviors of the Abeta(17-42) oligomers.
Zhao JH; Liu HL; Liu YF; Lin HY; Fang HW; Ho Y; Tsai WB
J Biomol Struct Dyn; 2009 Feb; 26(4):481-90. PubMed ID: 19108587
[TBL] [Abstract][Full Text] [Related]
14. Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Abeta peptides with implications for rates of fibril formation.
Reddy G; Straub JE; Thirumalai D
J Phys Chem B; 2009 Jan; 113(4):1162-72. PubMed ID: 19125574
[TBL] [Abstract][Full Text] [Related]
15. The Effects of A21G Mutation on Transmembrane Amyloid Beta (11-40) Trimer: An In Silico Study.
Ngo ST; Nguyen MT; Nguyen NT; Vu VV
J Phys Chem B; 2017 Sep; 121(36):8467-8474. PubMed ID: 28817283
[TBL] [Abstract][Full Text] [Related]
16. Atomistic investigation of an Iowa Amyloid-β trimer in aqueous solution.
Ngo ST; Thu Phung HT; Vu KB; Vu VV
RSC Adv; 2018 Dec; 8(73):41705-41712. PubMed ID: 35558787
[TBL] [Abstract][Full Text] [Related]
17. Explicit solvent molecular dynamics simulations of Aβ peptide interacting with ibuprofen ligands.
Lockhart C; Kim S; Klimov DK
J Phys Chem B; 2012 Nov; 116(43):12922-32. PubMed ID: 23051147
[TBL] [Abstract][Full Text] [Related]
18. Effects of all-atom force fields on amyloid oligomerization: replica exchange molecular dynamics simulations of the Aβ(16-22) dimer and trimer.
Nguyen PH; Li MS; Derreumaux P
Phys Chem Chem Phys; 2011 May; 13(20):9778-88. PubMed ID: 21487594
[TBL] [Abstract][Full Text] [Related]
19. Conformational changes of Aβ (1-42) monomers in different solvents.
Lee M; Chang HJ; Park JY; Shin J; Park JW; Choi JW; Kim JI; Na S
J Mol Graph Model; 2016 Apr; 65():8-14. PubMed ID: 26896721
[TBL] [Abstract][Full Text] [Related]
20. MMPBSA decomposition of the binding energy throughout a molecular dynamics simulation of amyloid-beta (Abeta(10-35)) aggregation.
Campanera JM; Pouplana R
Molecules; 2010 Apr; 15(4):2730-48. PubMed ID: 20428075
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
