261 related articles for article (PubMed ID: 28019059)
1. Impact of genotyping errors on statistical power of association tests in genomic analyses: A case study.
Hou L; Sun N; Mane S; Sayward F; Rajeevan N; Cheung KH; Cho K; Pyarajan S; Aslan M; Miller P; Harvey PD; Gaziano JM; Concato J; Zhao H
Genet Epidemiol; 2017 Feb; 41(2):152-162. PubMed ID: 28019059
[TBL] [Abstract][Full Text] [Related]
2. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.
Liao P; Satten GA; Hu YJ
Genet Epidemiol; 2017 Jul; 41(5):375-387. PubMed ID: 28560825
[TBL] [Abstract][Full Text] [Related]
3. Validation and assessment of variant calling pipelines for next-generation sequencing.
Pirooznia M; Kramer M; Parla J; Goes FS; Potash JB; McCombie WR; Zandi PP
Hum Genomics; 2014 Jul; 8(1):14. PubMed ID: 25078893
[TBL] [Abstract][Full Text] [Related]
4. Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies.
Standish KA; Carland TM; Lockwood GK; Pfeiffer W; Tatineni M; Huang CC; Lamberth S; Cherkas Y; Brodmerkel C; Jaeger E; Smith L; Rajagopal G; Curran ME; Schork NJ
BMC Bioinformatics; 2015 Sep; 16(1):304. PubMed ID: 26395405
[TBL] [Abstract][Full Text] [Related]
5. Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls.
Hu YJ; Liao P; Johnston HR; Allen AS; Satten GA
PLoS Genet; 2016 May; 12(5):e1006040. PubMed ID: 27152526
[TBL] [Abstract][Full Text] [Related]
6. Evaluation of SNP calling using single and multiple-sample calling algorithms by validation against array base genotyping and Mendelian inheritance.
Kumar P; Al-Shafai M; Al Muftah WA; Chalhoub N; Elsaid MF; Aleem AA; Suhre K
BMC Res Notes; 2014 Oct; 7():747. PubMed ID: 25339461
[TBL] [Abstract][Full Text] [Related]
7. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
8. Assessing the impact of differential genotyping errors on rare variant tests of association.
Mayer-Jochimsen M; Fast S; Tintle NL
PLoS One; 2013; 8(3):e56626. PubMed ID: 23472072
[TBL] [Abstract][Full Text] [Related]
9. The impact of genotype calling errors on family-based studies.
Yan Q; Chen R; Sutcliffe JS; Cook EH; Weeks DE; Li B; Chen W
Sci Rep; 2016 Jun; 6():28323. PubMed ID: 27328765
[TBL] [Abstract][Full Text] [Related]
10. Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.
Njuguna JN; Clark LV; Lipka AE; Anzoua KG; Bagmet L; Chebukin P; Dwiyanti MS; Dzyubenko E; Dzyubenko N; Ghimire BK; Jin X; Johnson DA; Kjeldsen JB; Nagano H; de Bem Oliveira I; Peng J; Petersen KK; Sabitov A; Seong ES; Yamada T; Yoo JH; Yu CY; Zhao H; Munoz P; Long SP; Sacks EJ
Plant Genome; 2023 Dec; 16(4):e20401. PubMed ID: 37903749
[TBL] [Abstract][Full Text] [Related]
11. iCall: a genotype-calling algorithm for rare, low-frequency and common variants on the Illumina exome array.
Zhou J; Tantoso E; Wong LP; Ong RT; Bei JX; Li Y; Liu J; Khor CC; Teo YY
Bioinformatics; 2014 Jun; 30(12):1714-20. PubMed ID: 24567545
[TBL] [Abstract][Full Text] [Related]
12. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
[TBL] [Abstract][Full Text] [Related]
13. Variability in GWAS analysis: the impact of genotype calling algorithm inconsistencies.
Miclaus K; Chierici M; Lambert C; Zhang L; Vega S; Hong H; Yin S; Furlanello C; Wolfinger R; Goodsaid F
Pharmacogenomics J; 2010 Aug; 10(4):324-35. PubMed ID: 20676070
[TBL] [Abstract][Full Text] [Related]
14. Comparing variant calling algorithms for target-exon sequencing in a large sample.
Lo Y; Kang HM; Nelson MR; Othman MI; Chissoe SL; Ehm MG; Abecasis GR; Zöllner S
BMC Bioinformatics; 2015 Mar; 16():75. PubMed ID: 25884587
[TBL] [Abstract][Full Text] [Related]
15. Low-, high-coverage, and two-stage DNA sequencing in the design of the genetic association study.
Xu C; Wu K; Zhang JG; Shen H; Deng HW
Genet Epidemiol; 2017 Apr; 41(3):187-197. PubMed ID: 27813156
[TBL] [Abstract][Full Text] [Related]
16. An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.
Crowgey EL; Stabley DL; Chen C; Huang H; Robbins KM; Polson SW; Sol-Church K; Wu CH
J Biomol Tech; 2015 Apr; 26(1):19-28. PubMed ID: 25649353
[TBL] [Abstract][Full Text] [Related]
17. Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.
Cheng AY; Teo YY; Ong RT
Bioinformatics; 2014 Jun; 30(12):1707-13. PubMed ID: 24558117
[TBL] [Abstract][Full Text] [Related]
18. Likelihood-based complex trait association testing for arbitrary depth sequencing data.
Yan S; Yuan S; Xu Z; Zhang B; Zhang B; Kang G; Byrnes A; Li Y
Bioinformatics; 2015 Sep; 31(18):2955-62. PubMed ID: 25979475
[TBL] [Abstract][Full Text] [Related]
19. SNP calling using genotype model selection on high-throughput sequencing data.
You N; Murillo G; Su X; Zeng X; Xu J; Ning K; Zhang S; Zhu J; Cui X
Bioinformatics; 2012 Mar; 28(5):643-50. PubMed ID: 22253293
[TBL] [Abstract][Full Text] [Related]
20. Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data.
Torkamaneh D; Laroche J; Bastien M; Abed A; Belzile F
BMC Bioinformatics; 2017 Jan; 18(1):5. PubMed ID: 28049422
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
