BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

167 related articles for article (PubMed ID: 28019094)

  • 1. Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications.
    Yang H; Chi H; Zhou WJ; Zeng WF; He K; Liu C; Sun RX; He SM
    J Proteome Res; 2017 Feb; 16(2):645-654. PubMed ID: 28019094
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pNovo: de novo peptide sequencing and identification using HCD spectra.
    Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
    J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
    [TBL] [Abstract][Full Text] [Related]  

  • 3. pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.
    Chi H; Chen H; He K; Wu L; Yang B; Sun RX; Liu J; Zeng WF; Song CQ; He SM; Dong MQ
    J Proteome Res; 2013 Feb; 12(2):615-25. PubMed ID: 23272783
    [TBL] [Abstract][Full Text] [Related]  

  • 4. pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework.
    Yang H; Chi H; Zeng WF; Zhou WJ; He SM
    Bioinformatics; 2019 Jul; 35(14):i183-i190. PubMed ID: 31510687
    [TBL] [Abstract][Full Text] [Related]  

  • 5. De novo sequencing with limited number of post-translational modifications per peptide.
    He L; Han X; Ma B
    J Bioinform Comput Biol; 2013 Aug; 11(4):1350007. PubMed ID: 23859271
    [TBL] [Abstract][Full Text] [Related]  

  • 6. pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization.
    Yang H; Chi H; Zhou WJ; Zeng WF; Liu C; Wang RM; Wang ZW; Niu XN; Chen ZL; He SM
    J Proteome Res; 2018 Jan; 17(1):119-128. PubMed ID: 29130300
    [TBL] [Abstract][Full Text] [Related]  

  • 7. NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra.
    Yan Y; Kusalik AJ; Wu FX
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(2):337-344. PubMed ID: 28368811
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Application of de Novo Sequencing to Large-Scale Complex Proteomics Data Sets.
    Devabhaktuni A; Elias JE
    J Proteome Res; 2016 Mar; 15(3):732-42. PubMed ID: 26743026
    [TBL] [Abstract][Full Text] [Related]  

  • 9. NovoHCD: de novo peptide sequencing from HCD spectra.
    Yan Y; Kusalik AJ; Wu FX
    IEEE Trans Nanobioscience; 2014 Jun; 13(2):65-72. PubMed ID: 24771591
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics.
    Alves G; Yu YK
    Bioinformatics; 2005 Oct; 21(19):3726-32. PubMed ID: 16105903
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Algorithms for the de novo sequencing of peptides from tandem mass spectra.
    Allmer J
    Expert Rev Proteomics; 2011 Oct; 8(5):645-57. PubMed ID: 21999834
    [TBL] [Abstract][Full Text] [Related]  

  • 12.
    Vitorino R; Guedes S; Trindade F; Correia I; Moura G; Carvalho P; Santos MAS; Amado F
    Expert Rev Proteomics; 2020; 17(7-8):595-607. PubMed ID: 33016158
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
    Pan C; Park BH; McDonald WH; Carey PA; Banfield JF; VerBerkmoes NC; Hettich RL; Samatova NF
    BMC Bioinformatics; 2010 Mar; 11():118. PubMed ID: 20205730
    [TBL] [Abstract][Full Text] [Related]  

  • 14. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Novor: real-time peptide de novo sequencing software.
    Ma B
    J Am Soc Mass Spectrom; 2015 Nov; 26(11):1885-94. PubMed ID: 26122521
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly.
    Beslic D; Tscheuschner G; Renard BY; Weller MG; Muth T
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36545804
    [TBL] [Abstract][Full Text] [Related]  

  • 17. UVnovo: A de Novo Sequencing Algorithm Using Single Series of Fragment Ions via Chromophore Tagging and 351 nm Ultraviolet Photodissociation Mass Spectrometry.
    Robotham SA; Horton AP; Cannon JR; Cotham VC; Marcotte EM; Brodbelt JS
    Anal Chem; 2016 Apr; 88(7):3990-7. PubMed ID: 26938041
    [TBL] [Abstract][Full Text] [Related]  

  • 18. High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.
    Searle BC; Dasari S; Turner M; Reddy AP; Choi D; Wilmarth PA; McCormack AL; David LL; Nagalla SR
    Anal Chem; 2004 Apr; 76(8):2220-30. PubMed ID: 15080731
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast de novo peptide sequencing and spectral alignment via tree decomposition.
    Liu C; Song Y; Yan B; Xu Y; Cai L
    Pac Symp Biocomput; 2006; ():255-66. PubMed ID: 17094244
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Tutorial on de novo peptide sequencing using MS/MS mass spectrometry.
    Chong KF; Leong HW
    J Bioinform Comput Biol; 2012 Dec; 10(6):1231002. PubMed ID: 22867628
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.