187 related articles for article (PubMed ID: 28042915)
1. Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage.
Willis SC; Hollenbeck CM; Puritz JB; Gold JR; Portnoy DS
Mol Ecol Resour; 2017 Sep; 17(5):955-965. PubMed ID: 28042915
[TBL] [Abstract][Full Text] [Related]
2. Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing.
Campbell NR; Harmon SA; Narum SR
Mol Ecol Resour; 2015 Jul; 15(4):855-67. PubMed ID: 25476721
[TBL] [Abstract][Full Text] [Related]
3. SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates.
Gonçalves da Silva A; Barendse W; Kijas JW; Barris WC; McWilliam S; Bunch RJ; McCullough R; Harrison B; Hoelzel AR; England PR
Mol Ecol Resour; 2015 Jul; 15(4):723-36. PubMed ID: 25388640
[TBL] [Abstract][Full Text] [Related]
4. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
[TBL] [Abstract][Full Text] [Related]
5. Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates.
Fountain ED; Pauli JN; Reid BN; Palsbøll PJ; Peery MZ
Mol Ecol Resour; 2016 Jul; 16(4):966-78. PubMed ID: 26946083
[TBL] [Abstract][Full Text] [Related]
6. Fast and cost-effective single nucleotide polymorphism (SNP) detection in the absence of a reference genome using semideep next-generation Random Amplicon Sequencing (RAMseq).
Bayerl H; Kraus RHS; Nowak C; Foerster DW; Fickel J; Kuehn R
Mol Ecol Resour; 2018 Jan; 18(1):107-117. PubMed ID: 28921927
[TBL] [Abstract][Full Text] [Related]
7. Double-digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with nonmodel organisms.
Recknagel H; Jacobs A; Herzyk P; Elmer KR
Mol Ecol Resour; 2015 Nov; 15(6):1316-29. PubMed ID: 25808755
[TBL] [Abstract][Full Text] [Related]
8. Genomic survey sequencing for development and validation of single-locus SSR markers in peanut (Arachis hypogaea L.).
Zhou X; Dong Y; Zhao J; Huang L; Ren X; Chen Y; Huang S; Liao B; Lei Y; Yan L; Jiang H
BMC Genomics; 2016 Jun; 17():420. PubMed ID: 27251557
[TBL] [Abstract][Full Text] [Related]
9. A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel.
Pujolar JM; Jacobsen MW; Frydenberg J; Als TD; Larsen PF; Maes GE; Zane L; Jian JB; Cheng L; Hansen MM
Mol Ecol Resour; 2013 Jul; 13(4):706-14. PubMed ID: 23656721
[TBL] [Abstract][Full Text] [Related]
10. An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly.
Velmurugan J; Mollison E; Barth S; Marshall D; Milne L; Creevey CJ; Lynch B; Meally H; McCabe M; Milbourne D
Ann Bot; 2016 Jul; 118(1):71-87. PubMed ID: 27268483
[TBL] [Abstract][Full Text] [Related]
11. Accounting for Errors in Low Coverage High-Throughput Sequencing Data When Constructing Genetic Maps Using Biparental Outcrossed Populations.
Bilton TP; Schofield MR; Black MA; Chagné D; Wilcox PL; Dodds KG
Genetics; 2018 May; 209(1):65-76. PubMed ID: 29487138
[TBL] [Abstract][Full Text] [Related]
12. Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis.
Tinker NA; Bekele WA; Hattori J
G3 (Bethesda); 2016 Apr; 6(4):857-63. PubMed ID: 26818073
[TBL] [Abstract][Full Text] [Related]
13. Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering.
Ilut DC; Nydam ML; Hare MP
Biomed Res Int; 2014; 2014():675158. PubMed ID: 25057498
[TBL] [Abstract][Full Text] [Related]
14. Coverage recommendation for genotyping analysis of highly heterologous species using next-generation sequencing technology.
Song K; Li L; Zhang G
Sci Rep; 2016 Oct; 6():35736. PubMed ID: 27760996
[TBL] [Abstract][Full Text] [Related]
15. A bi-filtering method for processing single nucleotide polymorphism array data improves the quality of genetic map and accuracy of quantitative trait locus mapping in doubled haploid populations of polyploid Brassica napus.
Cai G; Yang Q; Yi B; Fan C; Zhang C; Edwards D; Batley J; Zhou Y
BMC Genomics; 2015 May; 16(1):409. PubMed ID: 26018616
[TBL] [Abstract][Full Text] [Related]
16. MicNeSs: genotyping microsatellite loci from a collection of (NGS) reads.
Suez M; Behdenna A; Brouillet S; Graça P; Higuet D; Achaz G
Mol Ecol Resour; 2016 Mar; 16(2):524-33. PubMed ID: 26400716
[TBL] [Abstract][Full Text] [Related]
17. Population structure of Atlantic mackerel inferred from RAD-seq-derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection.
Rodríguez-Ezpeleta N; Bradbury IR; Mendibil I; Álvarez P; Cotano U; Irigoien X
Mol Ecol Resour; 2016 Jul; 16(4):991-1001. PubMed ID: 26936210
[TBL] [Abstract][Full Text] [Related]
18. Skim-based genotyping by sequencing.
Golicz AA; Bayer PE; Edwards D
Methods Mol Biol; 2015; 1245():257-70. PubMed ID: 25373763
[TBL] [Abstract][Full Text] [Related]
19. Construction of relatedness matrices using genotyping-by-sequencing data.
Dodds KG; McEwan JC; Brauning R; Anderson RM; van Stijn TC; Kristjánsson T; Clarke SM
BMC Genomics; 2015 Dec; 16():1047. PubMed ID: 26654230
[TBL] [Abstract][Full Text] [Related]
20. Microhaplotypes provide increased power from short-read DNA sequences for relationship inference.
Baetscher DS; Clemento AJ; Ng TC; Anderson EC; Garza JC
Mol Ecol Resour; 2018 Mar; 18(2):296-305. PubMed ID: 29143457
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
