BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 28052927)

  • 1. DNABarcodes: an R package for the systematic construction of DNA sample tags.
    Buschmann T
    Bioinformatics; 2017 Mar; 33(6):920-922. PubMed ID: 28052927
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Development of a program for in silico optimized selection of oligonucleotide-based molecular barcodes.
    Yang IS; Bae SW; Park B; Kim S
    PLoS One; 2021; 16(2):e0246354. PubMed ID: 33600481
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
    Galanti L; Shasha D; Gunsalus KC
    BMC Bioinformatics; 2021 Jul; 22(1):359. PubMed ID: 34215187
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.
    Hon J; Martínek T; Rajdl K; Lexa M
    Bioinformatics; 2013 Aug; 29(15):1900-1. PubMed ID: 23709494
    [TBL] [Abstract][Full Text] [Related]  

  • 5. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
    Fournier F; Joly Beauparlant C; Paradis R; Droit A
    Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations in multiplex sequencing experiments.
    Trébeau C; Boutet de Monvel J; Wong Jun Tai F; Petit C; Etournay R
    Bioinformatics; 2019 Aug; 35(15):2690-2691. PubMed ID: 30576403
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DNA barcoding in plants: evolution and applications of in silico approaches and resources.
    Bhargava M; Sharma A
    Mol Phylogenet Evol; 2013 Jun; 67(3):631-41. PubMed ID: 23500333
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Designing Randomized DNA Sequences Free of Restriction Enzyme Recognition Sites.
    Storm AJ; Jensen PA
    Biotechnol J; 2018 Jan; 13(1):. PubMed ID: 28865135
    [TBL] [Abstract][Full Text] [Related]  

  • 9. miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.
    Haunsberger SJ; Connolly NM; Prehn JH
    Bioinformatics; 2017 Feb; 33(4):592-593. PubMed ID: 27797767
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Tabu Variable Neighborhood Search for Designing DNA Barcodes.
    Wang B; Zhang Q; Wei X
    IEEE Trans Nanobioscience; 2020 Jan; 19(1):127-131. PubMed ID: 31581087
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing.
    Somervuo P; Koskinen P; Mei P; Holm L; Auvinen P; Paulin L
    BMC Bioinformatics; 2018 Jul; 19(1):257. PubMed ID: 29976145
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Spider: an R package for the analysis of species identity and evolution, with particular reference to DNA barcoding.
    Brown SD; Collins RA; Boyer S; Lefort MC; Malumbres-Olarte J; Vink CJ; Cruickshank RH
    Mol Ecol Resour; 2012 May; 12(3):562-5. PubMed ID: 22243808
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Insertion and deletion correcting DNA barcodes based on watermarks.
    Kracht D; Schober S
    BMC Bioinformatics; 2015 Feb; 16():50. PubMed ID: 25887410
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ndexr-an R package to interface with the network data exchange.
    Auer F; Hammoud Z; Ishkin A; Pratt D; Ideker T; Kramer F
    Bioinformatics; 2018 Feb; 34(4):716-717. PubMed ID: 29087446
    [TBL] [Abstract][Full Text] [Related]  

  • 15. runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
    Orzechowski P; Panszczyk A; Huang X; Moore JH
    Bioinformatics; 2018 Dec; 34(24):4302-4304. PubMed ID: 29939213
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FuzzyID2: A software package for large data set species identification via barcoding and metabarcoding using hidden Markov models and fuzzy set methods.
    Shi ZY; Yang CQ; Hao MD; Wang XY; Ward RD; Zhang AB
    Mol Ecol Resour; 2018 May; 18(3):666-675. PubMed ID: 29154499
    [TBL] [Abstract][Full Text] [Related]  

  • 17. bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.
    Lin J; Gresham J; Wang T; Kim SY; Alvarez J; Damrauer JS; Floyd S; Granek J; Allen A; Chan C; Xie J; Owzar K
    Bioinformatics; 2018 Oct; 34(20):3581-3583. PubMed ID: 29790906
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction.
    Morais DAA; Almeida RMC; Dalmolin RJS
    Bioinformatics; 2019 Aug; 35(16):2875-2876. PubMed ID: 30624611
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain.
    Grote S; Prüfer K; Kelso J; Dannemann M
    Bioinformatics; 2016 Oct; 32(20):3201-3203. PubMed ID: 27354695
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Constructing DNA Barcode Sets Based on Particle Swarm Optimization.
    Wang B; Zheng X; Zhou S; Zhou C; Wei X; Zhang Q; Wei Z
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):999-1002. PubMed ID: 28287980
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.