368 related articles for article (PubMed ID: 28062412)
1. Plant genome and transcriptome annotations: from misconceptions to simple solutions.
Bolger ME; Arsova B; Usadel B
Brief Bioinform; 2018 May; 19(3):437-449. PubMed ID: 28062412
[TBL] [Abstract][Full Text] [Related]
2. High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.
Seaver SM; Gerdes S; Frelin O; Lerma-Ortiz C; Bradbury LM; Zallot R; Hasnain G; Niehaus TD; El Yacoubi B; Pasternak S; Olson R; Pusch G; Overbeek R; Stevens R; de Crécy-Lagard V; Ware D; Hanson AD; Henry CS
Proc Natl Acad Sci U S A; 2014 Jul; 111(26):9645-50. PubMed ID: 24927599
[TBL] [Abstract][Full Text] [Related]
3. Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database.
Blavet N; Charif D; Oger-Desfeux C; Marais GA; Widmer A
BMC Genomics; 2011 Jul; 12():376. PubMed ID: 21791039
[TBL] [Abstract][Full Text] [Related]
4. Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.
Lohse M; Nagel A; Herter T; May P; Schroda M; Zrenner R; Tohge T; Fernie AR; Stitt M; Usadel B
Plant Cell Environ; 2014 May; 37(5):1250-8. PubMed ID: 24237261
[TBL] [Abstract][Full Text] [Related]
5. Multi-Omics Driven Assembly and Annotation of the Sandalwood (
Mahesh HB; Subba P; Advani J; Shirke MD; Loganathan RM; Chandana SL; Shilpa S; Chatterjee O; Pinto SM; Prasad TSK; Gowda M
Plant Physiol; 2018 Apr; 176(4):2772-2788. PubMed ID: 29440596
[TBL] [Abstract][Full Text] [Related]
6. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P
BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708
[TBL] [Abstract][Full Text] [Related]
7. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.
Holt C; Yandell M
BMC Bioinformatics; 2011 Dec; 12():491. PubMed ID: 22192575
[TBL] [Abstract][Full Text] [Related]
8. Construction of Pará rubber tree genome and multi-transcriptome database accelerates rubber researches.
Makita Y; Kawashima M; Lau NS; Othman AS; Matsui M
BMC Genomics; 2018 Jan; 19(Suppl 1):922. PubMed ID: 29363422
[TBL] [Abstract][Full Text] [Related]
9. Genix: a new online automated pipeline for bacterial genome annotation.
Kremer FS; Eslabão MR; Dellagostin OA; Pinto LD
FEMS Microbiol Lett; 2016 Dec; 363(23):. PubMed ID: 27856568
[TBL] [Abstract][Full Text] [Related]
10. AGeS: a software system for microbial genome sequence annotation.
Kumar K; Desai V; Cheng L; Khitrov M; Grover D; Satya RV; Yu C; Zavaljevski N; Reifman J
PLoS One; 2011 Mar; 6(3):e17469. PubMed ID: 21408217
[TBL] [Abstract][Full Text] [Related]
11. Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions.
Zimmer AD; Lang D; Buchta K; Rombauts S; Nishiyama T; Hasebe M; Van de Peer Y; Rensing SA; Reski R
BMC Genomics; 2013 Jul; 14():498. PubMed ID: 23879659
[TBL] [Abstract][Full Text] [Related]
12. TOA: A software package for automated functional annotation in non-model plant species.
Mora-Márquez F; Chano V; Vázquez-Poletti JL; López de Heredia U
Mol Ecol Resour; 2021 Feb; 21(2):621-636. PubMed ID: 33070442
[TBL] [Abstract][Full Text] [Related]
13. MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes.
Ruiz-Perez CA; Conrad RE; Konstantinidis KT
BMC Bioinformatics; 2021 Jan; 22(1):11. PubMed ID: 33407081
[TBL] [Abstract][Full Text] [Related]
14. De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis.
Castro JC; Maddox JD; Cobos M; Requena D; Zimic M; Bombarely A; Imán SA; Cerdeira LA; Medina AE
BMC Genomics; 2015 Nov; 16():997. PubMed ID: 26602763
[TBL] [Abstract][Full Text] [Related]
15. Blast2Fish: a reference-based annotation web tool for transcriptome analysis of non-model teleost fish.
Tso CH; Wu JL; Lu MW
BMC Bioinformatics; 2020 May; 21(1):174. PubMed ID: 32366294
[TBL] [Abstract][Full Text] [Related]
16. Using BUSCO to Assess Insect Genomic Resources.
Waterhouse RM; Seppey M; Simão FA; Zdobnov EM
Methods Mol Biol; 2019; 1858():59-74. PubMed ID: 30414111
[TBL] [Abstract][Full Text] [Related]
17. The plant ontology as a tool for comparative plant anatomy and genomic analyses.
Cooper L; Walls RL; Elser J; Gandolfo MA; Stevenson DW; Smith B; Preece J; Athreya B; Mungall CJ; Rensing S; Hiss M; Lang D; Reski R; Berardini TZ; Li D; Huala E; Schaeffer M; Menda N; Arnaud E; Shrestha R; Yamazaki Y; Jaiswal P
Plant Cell Physiol; 2013 Feb; 54(2):e1. PubMed ID: 23220694
[TBL] [Abstract][Full Text] [Related]
18. afterParty: turning raw transcriptomes into permanent resources.
Jones M; Blaxter M
BMC Bioinformatics; 2013 Oct; 14():301. PubMed ID: 24093729
[TBL] [Abstract][Full Text] [Related]
19. Translational genomics for plant breeding with the genome sequence explosion.
Kang YJ; Lee T; Lee J; Shim S; Jeong H; Satyawan D; Kim MY; Lee SH
Plant Biotechnol J; 2016 Apr; 14(4):1057-69. PubMed ID: 26269219
[TBL] [Abstract][Full Text] [Related]
20. Exploring drought stress-regulated genes in senna (Cassia angustifolia Vahl.): a transcriptomic approach.
Mehta RH; Ponnuchamy M; Kumar J; Reddy NR
Funct Integr Genomics; 2017 Jan; 17(1):1-25. PubMed ID: 27709374
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]