These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

47 related articles for article (PubMed ID: 28069635)

  • 1. JAGuaR: junction alignments to genome for RNA-seq reads.
    Butterfield YS; Kreitzman M; Thiessen N; Corbett RD; Li Y; Pang J; Ma YP; Jones SJ; Birol İ
    PLoS One; 2014; 9(7):e102398. PubMed ID: 25062255
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inference of isoforms from short sequence reads.
    Feng J; Li W; Jiang T
    J Comput Biol; 2011 Mar; 18(3):305-21. PubMed ID: 21385036
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CLASS: constrained transcript assembly of RNA-seq reads.
    Song L; Florea L
    BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S14. PubMed ID: 23734605
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions.
    Chong R; Insigne KD; Yao D; Burghard CP; Wang J; Hsiao YE; Jones EM; Goodman DB; Xiao X; Kosuri S
    Mol Cell; 2019 Jan; 73(1):183-194.e8. PubMed ID: 30503770
    [TBL] [Abstract][Full Text] [Related]  

  • 5. pathMap: a path-based mapping tool for long noisy reads with high sensitivity.
    Wei ZG; Zhang XD; Fan XG; Qian Y; Liu F; Wu FX
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38517696
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Performance difference of graph-based and alignment-based hybrid error correction methods for error-prone long reads.
    Wang A; Au KF
    Genome Biol; 2020 Jan; 21(1):14. PubMed ID: 31952552
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods.
    Grytten I; Rand KD; Nederbragt AJ; Sandve GK
    BMC Genomics; 2020 Apr; 21(1):282. PubMed ID: 32252628
    [TBL] [Abstract][Full Text] [Related]  

  • 8. In vivo and In vitro methods to identify DNA sequence variants that alter RNA Splicing.
    Patel PN; Gorham JM; Ito K; Seidman CE
    Curr Protoc Hum Genet; 2018 Apr; 97(1):e60. PubMed ID: 30038698
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Challenges in identifying mRNA transcript starts and ends from long-read sequencing data.
    Calvo-Roitberg E; Daniels RF; Pai AA
    bioRxiv; 2023 Jul; ():. PubMed ID: 37546743
    [TBL] [Abstract][Full Text] [Related]  

  • 10. EXFI: Exon and splice graph prediction without a reference genome.
    Langa J; Estonba A; Conklin D
    Ecol Evol; 2020 Aug; 10(16):8880-8893. PubMed ID: 32884664
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Application and Challenge of 3rd Generation Sequencing for Clinical Bacterial Studies.
    Ben Khedher M; Ghedira K; Rolain JM; Ruimy R; Croce O
    Int J Mol Sci; 2022 Jan; 23(3):. PubMed ID: 35163319
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure.
    Linheiro R; Archer J
    PLoS Comput Biol; 2021 Nov; 17(11):e1009631. PubMed ID: 34813594
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Using metatranscriptomics to estimate the diversity and composition of zooplankton communities.
    Lopez MLD; Lin YY; Sato M; Hsieh CH; Shiah FK; Machida RJ
    Mol Ecol Resour; 2022 Feb; 22(2):638-652. PubMed ID: 34555254
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Transcriptome assembly from long-read RNA-seq alignments with StringTie2.
    Kovaka S; Zimin AV; Pertea GM; Razaghi R; Salzberg SL; Pertea M
    Genome Biol; 2019 Dec; 20(1):278. PubMed ID: 31842956
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluating approaches to find exon chains based on long reads.
    Kuosmanen A; Norri T; Mäkinen V
    Brief Bioinform; 2018 May; 19(3):404-414. PubMed ID: 28069635
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 17. EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
    Bevilacqua V; Pietroleonardo N; Giannino E; Stroppa F; Simone D; Pesole G; Picardi E
    BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S7. PubMed ID: 25474441
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome.
    Ning G; Cheng X; Luo P; Liang F; Wang Z; Yu G; Li X; Wang D; Bao M
    Sci Rep; 2017 Mar; 7():43793. PubMed ID: 28272530
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies.
    Ye C; Hill CM; Wu S; Ruan J; Ma ZS
    Sci Rep; 2016 Aug; 6():31900. PubMed ID: 27573208
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 3.