161 related articles for article (PubMed ID: 28073755)
1. Advanced Boolean modeling of biological networks applied to systems pharmacology.
Irurzun-Arana I; Pastor JM; Trocóniz IF; Gómez-Mantilla JD
Bioinformatics; 2017 Apr; 33(7):1040-1048. PubMed ID: 28073755
[TBL] [Abstract][Full Text] [Related]
2. A novel algorithm for finding optimal driver nodes to target control complex networks and its applications for drug targets identification.
Guo WF; Zhang SW; Shi QQ; Zhang CM; Zeng T; Chen L
BMC Genomics; 2018 Jan; 19(Suppl 1):924. PubMed ID: 29363426
[TBL] [Abstract][Full Text] [Related]
3. Boolean network modeling in systems pharmacology.
Bloomingdale P; Nguyen VA; Niu J; Mager DE
J Pharmacokinet Pharmacodyn; 2018 Feb; 45(1):159-180. PubMed ID: 29307099
[TBL] [Abstract][Full Text] [Related]
4. Polynomial algebra of discrete models in systems biology.
Veliz-Cuba A; Jarrah AS; Laubenbacher R
Bioinformatics; 2010 Jul; 26(13):1637-43. PubMed ID: 20448137
[TBL] [Abstract][Full Text] [Related]
5. Boolean modeling in systems biology: an overview of methodology and applications.
Wang RS; Saadatpour A; Albert R
Phys Biol; 2012 Oct; 9(5):055001. PubMed ID: 23011283
[TBL] [Abstract][Full Text] [Related]
6. FALCON: a toolbox for the fast contextualization of logical networks.
De Landtsheer S; Trairatphisan P; Lucarelli P; Sauter T
Bioinformatics; 2017 Nov; 33(21):3431-3436. PubMed ID: 28673016
[TBL] [Abstract][Full Text] [Related]
7. GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models.
Ligon TS; Fröhlich F; Chis OT; Banga JR; Balsa-Canto E; Hasenauer J
Bioinformatics; 2018 Apr; 34(8):1421-1423. PubMed ID: 29206901
[TBL] [Abstract][Full Text] [Related]
8. Boolean Dynamic Modeling Approaches to Study Plant Gene Regulatory Networks: Integration, Validation, and Prediction.
Velderraín JD; Martínez-García JC; Álvarez-Buylla ER
Methods Mol Biol; 2017; 1629():297-315. PubMed ID: 28623593
[TBL] [Abstract][Full Text] [Related]
9. Discrete dynamic modeling of signal transduction networks.
Saadatpour A; Albert R
Methods Mol Biol; 2012; 880():255-72. PubMed ID: 23361989
[TBL] [Abstract][Full Text] [Related]
10. Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems.
Raue A; Steiert B; Schelker M; Kreutz C; Maiwald T; Hass H; Vanlier J; Tönsing C; Adlung L; Engesser R; Mader W; Heinemann T; Hasenauer J; Schilling M; Höfer T; Klipp E; Theis F; Klingmüller U; Schöberl B; Timmer J
Bioinformatics; 2015 Nov; 31(21):3558-60. PubMed ID: 26142188
[TBL] [Abstract][Full Text] [Related]
11. BoolNet--an R package for generation, reconstruction and analysis of Boolean networks.
Müssel C; Hopfensitz M; Kestler HA
Bioinformatics; 2010 May; 26(10):1378-80. PubMed ID: 20378558
[TBL] [Abstract][Full Text] [Related]
12. CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets.
Flobak Å; Vazquez M; Lægreid A; Valencia A
Bioinformatics; 2017 Aug; 33(15):2410-2412. PubMed ID: 28444126
[TBL] [Abstract][Full Text] [Related]
13. caspo: a toolbox for automated reasoning on the response of logical signaling networks families.
Videla S; Saez-Rodriguez J; Guziolowski C; Siegel A
Bioinformatics; 2017 Mar; 33(6):947-950. PubMed ID: 28065903
[TBL] [Abstract][Full Text] [Related]
14. xMWAS: a data-driven integration and differential network analysis tool.
Uppal K; Ma C; Go YM; Jones DP; Wren J
Bioinformatics; 2018 Feb; 34(4):701-702. PubMed ID: 29069296
[TBL] [Abstract][Full Text] [Related]
15. Sorad: a systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements.
Äijö T; Granberg K; Lähdesmäki H
Bioinformatics; 2013 May; 29(10):1283-91. PubMed ID: 23505293
[TBL] [Abstract][Full Text] [Related]
16. Agent-based re-engineering of ErbB signaling: a modeling pipeline for integrative systems biology.
Das AA; Ajayakumar Darsana T; Jacob E
Bioinformatics; 2017 Mar; 33(5):726-732. PubMed ID: 27998938
[TBL] [Abstract][Full Text] [Related]
17. Towards patient stratification and treatment in the autoimmune disease lupus erythematosus using a systems pharmacology approach.
Ruiz-Cerdá ML; Irurzun-Arana I; González-Garcia I; Hu C; Zhou H; Vermeulen A; Trocóniz IF; Gómez-Mantilla JD
Eur J Pharm Sci; 2016 Oct; 94():46-58. PubMed ID: 27080094
[TBL] [Abstract][Full Text] [Related]
18. Application of pharmacometrics and quantitative systems pharmacology to cancer therapy: The example of luminal a breast cancer.
Fleisher B; Brown AN; Ait-Oudhia S
Pharmacol Res; 2017 Oct; 124():20-33. PubMed ID: 28735000
[TBL] [Abstract][Full Text] [Related]
19. Detecting subnetwork-level dynamic correlations.
Yan Y; Qiu S; Jin Z; Gong S; Bai Y; Lu J; Yu T
Bioinformatics; 2017 Jan; 33(2):256-265. PubMed ID: 27667792
[TBL] [Abstract][Full Text] [Related]
20. MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory.
Marchetti L; Manca V
Bioinformatics; 2015 Apr; 31(8):1328-30. PubMed ID: 25504849
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
