317 related articles for article (PubMed ID: 28075484)
1. Assay for Transposase-Accessible Chromatin Using Sequencing (ATAC-seq) Data Analysis.
Miskimen KLS; Chan ER; Haines JL
Curr Protoc Hum Genet; 2017 Jan; 92():20.4.1-20.4.13. PubMed ID: 28075484
[TBL] [Abstract][Full Text] [Related]
2. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
Elife; 2020 Nov; 9():. PubMed ID: 33191916
[TBL] [Abstract][Full Text] [Related]
3. Analytical Approaches for ATAC-seq Data Analysis.
Smith JP; Sheffield NC
Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
[TBL] [Abstract][Full Text] [Related]
4. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
Bajic M; Maher KA; Deal RB
Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
[TBL] [Abstract][Full Text] [Related]
5. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
Buenrostro JD; Wu B; Chang HY; Greenleaf WJ
Curr Protoc Mol Biol; 2015 Jan; 109():21.29.1-21.29.9. PubMed ID: 25559105
[TBL] [Abstract][Full Text] [Related]
6. ATAC-seq Assay with Low Mitochondrial DNA Contamination from Primary Human CD4+ T Lymphocytes.
Rickner HD; Niu SY; Cheng CS
J Vis Exp; 2019 Mar; (145):. PubMed ID: 30958473
[TBL] [Abstract][Full Text] [Related]
7. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
Sun Y; Miao N; Sun T
Hereditas; 2019; 156():29. PubMed ID: 31427911
[TBL] [Abstract][Full Text] [Related]
8. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
[TBL] [Abstract][Full Text] [Related]
9. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.
Lu Z; Hofmeister BT; Vollmers C; DuBois RM; Schmitz RJ
Nucleic Acids Res; 2017 Apr; 45(6):e41. PubMed ID: 27903897
[TBL] [Abstract][Full Text] [Related]
10. Assay for Transposase-Accessible Chromatin with High-Throughput Sequencing (ATAC-Seq) Protocol for Zebrafish Embryos.
Doganli C; Sandoval M; Thomas S; Hart D
Methods Mol Biol; 2017; 1507():59-66. PubMed ID: 27832532
[TBL] [Abstract][Full Text] [Related]
11. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
[TBL] [Abstract][Full Text] [Related]
12. ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.
Chen X; Shen Y; Draper W; Buenrostro JD; Litzenburger U; Cho SW; Satpathy AT; Carter AC; Ghosh RP; East-Seletsky A; Doudna JA; Greenleaf WJ; Liphardt JT; Chang HY
Nat Methods; 2016 Dec; 13(12):1013-1020. PubMed ID: 27749837
[TBL] [Abstract][Full Text] [Related]
13. HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.
Tarbell ED; Liu T
Nucleic Acids Res; 2019 Sep; 47(16):e91. PubMed ID: 31199868
[TBL] [Abstract][Full Text] [Related]
14. Assay for Transposase Accessible Chromatin (ATAC-Seq) to Chart the Open Chromatin Landscape of Human Pancreatic Islets.
Raurell-Vila H; Ramos-Rodríguez M; Pasquali L
Methods Mol Biol; 2018; 1766():197-208. PubMed ID: 29605854
[TBL] [Abstract][Full Text] [Related]
15. A neural network based model effectively predicts enhancers from clinical ATAC-seq samples.
Thibodeau A; Uyar A; Khetan S; Stitzel ML; Ucar D
Sci Rep; 2018 Oct; 8(1):16048. PubMed ID: 30375457
[TBL] [Abstract][Full Text] [Related]
16. Single-cell chromatin accessibility reveals principles of regulatory variation.
Buenrostro JD; Wu B; Litzenburger UM; Ruff D; Gonzales ML; Snyder MP; Chang HY; Greenleaf WJ
Nature; 2015 Jul; 523(7561):486-90. PubMed ID: 26083756
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide analysis of chromatin accessibility using ATAC-seq.
Shashikant T; Ettensohn CA
Methods Cell Biol; 2019; 151():219-235. PubMed ID: 30948010
[TBL] [Abstract][Full Text] [Related]
18. Profiling Open Chromatin Structure in the Ovarian Somatic Cells Using ATAC-seq.
Murano K; Iwasaki YW; Siomi H
Methods Mol Biol; 2018; 1680():165-177. PubMed ID: 29030848
[TBL] [Abstract][Full Text] [Related]
19. The Chromatin Accessibility Landscape of Nonalcoholic Fatty Liver Disease Progression.
Kang B; Kang B; Roh TY; Seong RH; Kim W
Mol Cells; 2022 May; 45(5):343-352. PubMed ID: 35422452
[TBL] [Abstract][Full Text] [Related]
20. ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells.
Scharer CD; Blalock EL; Barwick BG; Haines RR; Wei C; Sanz I; Boss JM
Sci Rep; 2016 Jun; 6():27030. PubMed ID: 27249108
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
