These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. CSA: an efficient algorithm to improve circular DNA multiple alignment. Fernandes F; Pereira L; Freitas AT BMC Bioinformatics; 2009 Jul; 10():230. PubMed ID: 19627599 [TBL] [Abstract][Full Text] [Related]
3. GATA: a graphic alignment tool for comparative sequence analysis. Nix DA; Eisen MB BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071 [TBL] [Abstract][Full Text] [Related]
4. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences. Bininda-Emonds OR BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769 [TBL] [Abstract][Full Text] [Related]
5. Alignment of protein sequences by their profiles. Marti-Renom MA; Madhusudhan MS; Sali A Protein Sci; 2004 Apr; 13(4):1071-87. PubMed ID: 15044736 [TBL] [Abstract][Full Text] [Related]
6. ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approach. Lyras DP; Metzler D BMC Bioinformatics; 2014 Aug; 15(1):265. PubMed ID: 25099134 [TBL] [Abstract][Full Text] [Related]
7. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy. Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658 [TBL] [Abstract][Full Text] [Related]
9. PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids. Kuznetsov IB; McDuffie M BMC Res Notes; 2015 May; 8():187. PubMed ID: 25947299 [TBL] [Abstract][Full Text] [Related]
10. SeqTools: visual tools for manual analysis of sequence alignments. Barson G; Griffiths E BMC Res Notes; 2016 Jan; 9():39. PubMed ID: 26801397 [TBL] [Abstract][Full Text] [Related]
11. T-Coffee: A novel method for fast and accurate multiple sequence alignment. Notredame C; Higgins DG; Heringa J J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570 [TBL] [Abstract][Full Text] [Related]
17. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466 [TBL] [Abstract][Full Text] [Related]
18. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework. Su W; Liao X; Lu Y; Zou Q; Peng S J Comput Biol; 2017 Dec; 24(12):1230-1242. PubMed ID: 29116822 [TBL] [Abstract][Full Text] [Related]
19. Accurate anchoring alignment of divergent sequences. Huang W; Umbach DM; Li L Bioinformatics; 2006 Jan; 22(1):29-34. PubMed ID: 16301203 [TBL] [Abstract][Full Text] [Related]