1436 related articles for article (PubMed ID: 28088763)
21. Quality control of single-cell RNA-seq by SinQC.
Jiang P; Thomson JA; Stewart R
Bioinformatics; 2016 Aug; 32(16):2514-6. PubMed ID: 27153613
[TBL] [Abstract][Full Text] [Related]
22. JingleBells: A Repository of Immune-Related Single-Cell RNA-Sequencing Datasets.
Ner-Gaon H; Melchior A; Golan N; Ben-Haim Y; Shay T
J Immunol; 2017 May; 198(9):3375-3379. PubMed ID: 28416714
[TBL] [Abstract][Full Text] [Related]
23. Normalization of Single-Cell RNA-Seq Data.
Risso D
Methods Mol Biol; 2021; 2284():303-329. PubMed ID: 33835450
[TBL] [Abstract][Full Text] [Related]
24. scRNA-seq data analysis method to improve analysis performance.
Lu J; Sheng Y; Qian W; Pan M; Zhao X; Ge Q
IET Nanobiotechnol; 2023 May; 17(3):246-256. PubMed ID: 36727937
[TBL] [Abstract][Full Text] [Related]
25. CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny.
Kong GL; Nguyen TT; Rosales WK; Panikar AD; Cheney JHW; Lusardi TA; Yashar WM; Curtiss BM; Carratt SA; Braun TP; Maxson JE
BMC Bioinformatics; 2024 Apr; 25(1):142. PubMed ID: 38566005
[TBL] [Abstract][Full Text] [Related]
26. A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.
Meng J; Lu Z; Liu H; Zhang L; Zhang S; Chen Y; Rao MK; Huang Y
Methods; 2014 Oct; 69(3):274-81. PubMed ID: 24979058
[TBL] [Abstract][Full Text] [Related]
27. SCRIP: an accurate simulator for single-cell RNA sequencing data.
Qin F; Luo X; Xiao F; Cai G
Bioinformatics; 2022 Feb; 38(5):1304-1311. PubMed ID: 34874992
[TBL] [Abstract][Full Text] [Related]
28. Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
Slovin S; Carissimo A; Panariello F; Grimaldi A; Bouché V; Gambardella G; Cacchiarelli D
Methods Mol Biol; 2021; 2284():343-365. PubMed ID: 33835452
[TBL] [Abstract][Full Text] [Related]
29. scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data.
Nassiri I; Fairfax B; Lee A; Wu Y; Buck D; Piazza P
BMC Genomics; 2023 Jul; 24(1):381. PubMed ID: 37415108
[TBL] [Abstract][Full Text] [Related]
30. Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data.
Hong R; Koga Y; Bandyadka S; Leshchyk A; Wang Y; Akavoor V; Cao X; Sarfraz I; Wang Z; Alabdullatif S; Jansen F; Yajima M; Johnson WE; Campbell JD
Nat Commun; 2022 Mar; 13(1):1688. PubMed ID: 35354805
[TBL] [Abstract][Full Text] [Related]
31. miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data.
Hippen AA; Falco MM; Weber LM; Erkan EP; Zhang K; Doherty JA; Vähärautio A; Greene CS; Hicks SC
PLoS Comput Biol; 2021 Aug; 17(8):e1009290. PubMed ID: 34428202
[TBL] [Abstract][Full Text] [Related]
32. DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments.
Vrahatis AG; Balomenos P; Tsakalidis AK; Bezerianos A
Bioinformatics; 2016 Dec; 32(24):3844-3846. PubMed ID: 27542770
[TBL] [Abstract][Full Text] [Related]
33. DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data.
Sun Z; Wang T; Deng K; Wang XF; Lafyatis R; Ding Y; Hu M; Chen W
Bioinformatics; 2018 Jan; 34(1):139-146. PubMed ID: 29036318
[TBL] [Abstract][Full Text] [Related]
34. An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.
Mah CK; Wenzel AT; Juarez EF; Tabor T; Reich MM; Mesirov JP
F1000Res; 2018; 7():1306. PubMed ID: 31316748
[TBL] [Abstract][Full Text] [Related]
35. scViewer: An Interactive Single-Cell Gene Expression Visualization Tool.
Patil AR; Kumar G; Zhou H; Warren L
Cells; 2023 May; 12(11):. PubMed ID: 37296611
[TBL] [Abstract][Full Text] [Related]
36. Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq.
Cole MB; Risso D; Wagner A; DeTomaso D; Ngai J; Purdom E; Dudoit S; Yosef N
Cell Syst; 2019 Apr; 8(4):315-328.e8. PubMed ID: 31022373
[TBL] [Abstract][Full Text] [Related]
37. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
Yang A; Troup M; Lin P; Ho JW
Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200
[TBL] [Abstract][Full Text] [Related]
38. QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.
Zhang Y; Xie J; Yang J; Fennell A; Zhang C; Ma Q
Bioinformatics; 2017 Feb; 33(3):450-452. PubMed ID: 28172469
[TBL] [Abstract][Full Text] [Related]
39. WASP: a versatile, web-accessible single cell RNA-Seq processing platform.
Hoek A; Maibach K; Özmen E; Vazquez-Armendariz AI; Mengel JP; Hain T; Herold S; Goesmann A
BMC Genomics; 2021 Mar; 22(1):195. PubMed ID: 33736596
[TBL] [Abstract][Full Text] [Related]
40. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones.
Müller S; Cho A; Liu SJ; Lim DA; Diaz A
Bioinformatics; 2018 Sep; 34(18):3217-3219. PubMed ID: 29897414
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
