BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

316 related articles for article (PubMed ID: 28093074)

  • 21. RNA-Binding Proteins and Their Targets in Trypanosoma brucei: Single Nucleotide Resolution Using iCLIP and iCLAP.
    Dixit S; Alfonzo JD; Lukeš J
    Methods Mol Biol; 2020; 2116():303-323. PubMed ID: 32221928
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Characterization of the B Cell Transcriptome Bound by RNA-Binding Proteins with iCLIP.
    Díaz-Muñoz MD; Monzón-Casanova E; Turner M
    Methods Mol Biol; 2017; 1623():159-179. PubMed ID: 28589356
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
    Budak G; Srivastava R; Janga SC
    RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts.
    Gillen AE; Yamamoto TM; Kline E; Hesselberth JR; Kabos P
    BMC Genomics; 2016 May; 17():338. PubMed ID: 27150721
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2).
    Lewinski M; Brüggemann M; Köster T; Reichel M; Bergelt T; Meyer K; König J; Zarnack K; Staiger D
    Nat Protoc; 2024 Apr; 19(4):1183-1234. PubMed ID: 38278964
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
    Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
    Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
    [TBL] [Abstract][Full Text] [Related]  

  • 28. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution.
    König J; Zarnack K; Rot G; Curk T; Kayikci M; Zupan B; Turner DJ; Luscombe NM; Ule J
    Nat Struct Mol Biol; 2010 Jul; 17(7):909-15. PubMed ID: 20601959
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.
    Van Nostrand EL; Huelga SC; Yeo GW
    Adv Exp Med Biol; 2016; 907():1-28. PubMed ID: 27256380
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7.
    Meyer K; Köster T; Nolte C; Weinholdt C; Lewinski M; Grosse I; Staiger D
    Genome Biol; 2017 Oct; 18(1):204. PubMed ID: 29084609
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.
    Sugimoto Y; König J; Hussain S; Zupan B; Curk T; Frye M; Ule J
    Genome Biol; 2012 Aug; 13(8):R67. PubMed ID: 22863408
    [TBL] [Abstract][Full Text] [Related]  

  • 32. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
    Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
    Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Matrin3 binds directly to intronic pyrimidine-rich sequences and controls alternative splicing.
    Uemura Y; Oshima T; Yamamoto M; Reyes CJ; Costa Cruz PH; Shibuya T; Kawahara Y
    Genes Cells; 2017 Sep; 22(9):785-798. PubMed ID: 28695676
    [TBL] [Abstract][Full Text] [Related]  

  • 34. De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function.
    Han A; Stoilov P; Linares AJ; Zhou Y; Fu XD; Black DL
    PLoS Comput Biol; 2014 Jan; 10(1):e1003442. PubMed ID: 24499931
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP.
    Sutandy FX; Hildebrandt A; König J
    Methods Mol Biol; 2016; 1358():175-95. PubMed ID: 26463384
    [TBL] [Abstract][Full Text] [Related]  

  • 36. iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites.
    Busch A; Brüggemann M; Ebersberger S; Zarnack K
    Methods; 2020 Jun; 178():49-62. PubMed ID: 31751605
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
    Li L; Förstner KU; Chao Y
    Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
    Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
    Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
    [TBL] [Abstract][Full Text] [Related]  

  • 39. [Advances in technologies for large-scale enrichment and identification of ribonucleic acid-protein complexes].
    Fan Z; Qin W
    Se Pu; 2021 Feb; 39(2):105-111. PubMed ID: 34227341
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Advances in CLIP Technologies for Studies of Protein-RNA Interactions.
    Lee FCY; Ule J
    Mol Cell; 2018 Feb; 69(3):354-369. PubMed ID: 29395060
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 16.