BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 28095404)

  • 1. Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.
    Hacisuleyman A; Erman B
    PLoS Comput Biol; 2017 Jan; 13(1):e1005319. PubMed ID: 28095404
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions.
    Hacisuleyman A; Erman B
    Proteins; 2017 Jun; 85(6):1056-1064. PubMed ID: 28241380
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Correlation, response and entropy approaches to allosteric behaviors: a critical comparison on the ubiquitin case.
    Cecconi F; Costantini G; Guardiani C; Baldovin M; Vulpiani A
    Phys Biol; 2023 Jul; 20(5):. PubMed ID: 37364583
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
    Kalescky R; Zhou H; Liu J; Tao P
    PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Information flow and allosteric communication in proteins.
    Hacisuleyman A; Erman B
    J Chem Phys; 2022 May; 156(18):185101. PubMed ID: 35568552
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dynamical network of residue-residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation.
    Doshi U; Holliday MJ; Eisenmesser EZ; Hamelberg D
    Proc Natl Acad Sci U S A; 2016 Apr; 113(17):4735-40. PubMed ID: 27071107
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.
    Stetz G; Verkhivker GM
    PLoS Comput Biol; 2017 Jan; 13(1):e1005299. PubMed ID: 28095400
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Subsets of Slow Dynamic Modes Reveal Global Information Sources as Allosteric Sites.
    Altintel B; Acar B; Erman B; Haliloglu T
    J Mol Biol; 2022 Sep; 434(17):167644. PubMed ID: 35644497
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication.
    Guarnera E; Berezovsky IN
    PLoS Comput Biol; 2016 Mar; 12(3):e1004678. PubMed ID: 26939022
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Distinctive communication networks in inactive states of β
    Sogunmez N; Akten ED
    Proteins; 2020 Nov; 88(11):1458-1471. PubMed ID: 32530095
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.
    Stetz G; Verkhivker GM
    PLoS One; 2015; 10(11):e0143752. PubMed ID: 26619280
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NbIT--a new information theory-based analysis of allosteric mechanisms reveals residues that underlie function in the leucine transporter LeuT.
    LeVine MV; Weinstein H
    PLoS Comput Biol; 2014 May; 10(5):e1003603. PubMed ID: 24785005
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Entropy redistribution controls allostery in a metalloregulatory protein.
    Capdevila DA; Braymer JJ; Edmonds KA; Wu H; Giedroc DP
    Proc Natl Acad Sci U S A; 2017 Apr; 114(17):4424-4429. PubMed ID: 28348247
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Calculating Transfer Entropy from Variance-Covariance Matrices Provides Insight into Allosteric Communication in ERK2.
    Garcia Michel LR; Keirns CD; Ahlbrecht BC; Barr DA
    J Chem Theory Comput; 2021 May; 17(5):3168-3177. PubMed ID: 33929855
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Timing Correlations in Proteins Predict Functional Modules and Dynamic Allostery.
    Lin MM
    J Am Chem Soc; 2016 Apr; 138(15):5036-43. PubMed ID: 27003106
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tuning the "violin" of protein kinases: The role of dynamics-based allostery.
    Ahuja LG; Taylor SS; Kornev AP
    IUBMB Life; 2019 Jun; 71(6):685-696. PubMed ID: 31063633
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Exploring Molecular Mechanisms of Paradoxical Activation in the BRAF Kinase Dimers: Atomistic Simulations of Conformational Dynamics and Modeling of Allosteric Communication Networks and Signaling Pathways.
    Tse A; Verkhivker GM
    PLoS One; 2016; 11(11):e0166583. PubMed ID: 27861609
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Gauging Dynamics-driven Allostery Using a New Computational Tool: A CAP Case Study.
    Kornev AP; Weng JH; Maillard RA; Taylor SS
    J Mol Biol; 2024 Jan; 436(2):168395. PubMed ID: 38097109
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dynamic Allostery of the Catabolite Activator Protein Revealed by Interatomic Forces.
    Louet M; Seifert C; Hensen U; Gräter F
    PLoS Comput Biol; 2015 Aug; 11(8):e1004358. PubMed ID: 26244893
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mechanistic basis for ubiquitin modulation of a protein energy landscape.
    Carroll EC; Latorraca NR; Lindner JM; Maguire BC; Pelton JG; Marqusee S
    Proc Natl Acad Sci U S A; 2021 Mar; 118(12):. PubMed ID: 33723075
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.