These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

118 related articles for article (PubMed ID: 28112101)

  • 1. A better prediction of conformational changes of proteins using minimally connected network models.
    Toussi CA; Soheilifard R
    Phys Biol; 2017 Jan; 13(6):066013. PubMed ID: 28112101
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Conventional NMA as a better standard for evaluating elastic network models.
    Na H; Song G
    Proteins; 2015 Feb; 83(2):259-67. PubMed ID: 25471641
    [TBL] [Abstract][Full Text] [Related]  

  • 3. How well can we understand large-scale protein motions using normal modes of elastic network models?
    Yang L; Song G; Jernigan RL
    Biophys J; 2007 Aug; 93(3):920-9. PubMed ID: 17483178
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient prediction of protein conformational pathways based on the hybrid elastic network model.
    Seo S; Jang Y; Qian P; Liu WK; Choi JB; Lim BS; Kim MK
    J Mol Graph Model; 2014 Feb; 47():25-36. PubMed ID: 24296313
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Distance matrix-based approach to protein structure prediction.
    Kloczkowski A; Jernigan RL; Wu Z; Song G; Yang L; Kolinski A; Pokarowski P
    J Struct Funct Genomics; 2009 Mar; 10(1):67-81. PubMed ID: 19224393
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein elastic network models and the ranges of cooperativity.
    Yang L; Song G; Jernigan RL
    Proc Natl Acad Sci U S A; 2009 Jul; 106(30):12347-52. PubMed ID: 19617554
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A connection rule for alpha-carbon coarse-grained elastic network models using chemical bond information.
    Jeong JI; Jang Y; Kim MK
    J Mol Graph Model; 2006 Jan; 24(4):296-306. PubMed ID: 16289973
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Generalized spring tensor models for protein fluctuation dynamics and conformation changes.
    Na H; Lin TL; Song G
    Adv Exp Med Biol; 2014; 805():107-35. PubMed ID: 24446359
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Analysis of conformational motions and related key residue interactions responsible for a specific function of proteins with elastic network model.
    Su JG; Han XM; Zhang X; Hou YX; Zhu JZ; Wu YD
    J Biomol Struct Dyn; 2016; 34(3):560-71. PubMed ID: 25909329
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bridging between normal mode analysis and elastic network models.
    Na H; Song G
    Proteins; 2014 Sep; 82(9):2157-68. PubMed ID: 24692201
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein structural variation in computational models and crystallographic data.
    Kondrashov DA; Van Wynsberghe AW; Bannen RM; Cui Q; Phillips GN
    Structure; 2007 Feb; 15(2):169-77. PubMed ID: 17292835
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Jumping between protein conformers using normal modes.
    Mahajan S; Sanejouand YH
    J Comput Chem; 2017 Jul; 38(18):1622-1630. PubMed ID: 28470912
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A normal mode-based geometric simulation approach for exploring biologically relevant conformational transitions in proteins.
    Ahmed A; Rippmann F; Barnickel G; Gohlke H
    J Chem Inf Model; 2011 Jul; 51(7):1604-22. PubMed ID: 21639141
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Parameterizing elastic network models to capture the dynamics of proteins.
    Koehl P; Orland H; Delarue M
    J Comput Chem; 2021 Sep; 42(23):1643-1661. PubMed ID: 34117647
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A unification of the elastic network model and the Gaussian network model for optimal description of protein conformational motions and fluctuations.
    Zheng W
    Biophys J; 2008 May; 94(10):3853-7. PubMed ID: 18234807
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pushing the Backbone in Protein-Protein Docking.
    Kuroda D; Gray JJ
    Structure; 2016 Oct; 24(10):1821-1829. PubMed ID: 27568930
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Characterizing conformation changes in proteins through the torsional elastic response.
    Dos Santos HG; Klett J; Méndez R; Bastolla U
    Biochim Biophys Acta; 2013 May; 1834(5):836-46. PubMed ID: 23429178
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Torsional network model: normal modes in torsion angle space better correlate with conformation changes in proteins.
    Mendez R; Bastolla U
    Phys Rev Lett; 2010 Jun; 104(22):228103. PubMed ID: 20867208
    [TBL] [Abstract][Full Text] [Related]  

  • 19. On the relationship between low-frequency normal modes and the large-scale conformational changes of proteins.
    Mahajan S; Sanejouand YH
    Arch Biochem Biophys; 2015 Feb; 567():59-65. PubMed ID: 25562404
    [TBL] [Abstract][Full Text] [Related]  

  • 20. iGNM: a database of protein functional motions based on Gaussian Network Model.
    Yang LW; Liu X; Jursa CJ; Holliman M; Rader AJ; Karimi HA; Bahar I
    Bioinformatics; 2005 Jul; 21(13):2978-87. PubMed ID: 15860562
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.