175 related articles for article (PubMed ID: 28123117)
1. Phylogenomics from Whole Genome Sequences Using aTRAM.
Allen JM; Boyd B; Nguyen NP; Vachaspati P; Warnow T; Huang DI; Grady PGS; Bell KC; Cronk QCB; Mugisha L; Pittendrigh BR; Leonardi MS; Reed DL; Johnson KP
Syst Biol; 2017 Sep; 66(5):786-798. PubMed ID: 28123117
[TBL] [Abstract][Full Text] [Related]
2. aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data.
Allen JM; Huang DI; Cronk QC; Johnson KP
BMC Bioinformatics; 2015 Mar; 16(1):98. PubMed ID: 25887972
[TBL] [Abstract][Full Text] [Related]
3. A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics.
Ilves KL; López-Fernández H
Mol Ecol Resour; 2014 Jul; 14(4):802-11. PubMed ID: 24410873
[TBL] [Abstract][Full Text] [Related]
4. From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case.
Comas I; Moya A; González-Candelas F
Syst Biol; 2007 Feb; 56(1):1-16. PubMed ID: 17366133
[TBL] [Abstract][Full Text] [Related]
5. Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling.
Reddy S; Kimball RT; Pandey A; Hosner PA; Braun MJ; Hackett SJ; Han KL; Harshman J; Huddleston CJ; Kingston S; Marks BD; Miglia KJ; Moore WS; Sheldon FH; Witt CC; Yuri T; Braun EL
Syst Biol; 2017 Sep; 66(5):857-879. PubMed ID: 28369655
[TBL] [Abstract][Full Text] [Related]
6. Next-generation phylogenomics using a Target Restricted Assembly Method.
Johnson KP; Walden KK; Robertson HM
Mol Phylogenet Evol; 2013 Jan; 66(1):417-22. PubMed ID: 23000819
[TBL] [Abstract][Full Text] [Related]
7. An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data.
Fan H; Ives AR; Surget-Groba Y; Cannon CH
BMC Genomics; 2015 Jul; 16(1):522. PubMed ID: 26169061
[TBL] [Abstract][Full Text] [Related]
8. Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny.
Chen MY; Liang D; Zhang P
Syst Biol; 2015 Nov; 64(6):1104-20. PubMed ID: 26276158
[TBL] [Abstract][Full Text] [Related]
9. Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches.
Rodríguez A; Burgon JD; Lyra M; Irisarri I; Baurain D; Blaustein L; Göçmen B; Künzel S; Mable BK; Nolte AW; Veith M; Steinfartz S; Elmer KR; Philippe H; Vences M
Mol Phylogenet Evol; 2017 Oct; 115():16-26. PubMed ID: 28716741
[TBL] [Abstract][Full Text] [Related]
10. The Utility of Genome Skimming for Phylogenomic Analyses as Demonstrated for Glycerid Relationships (Annelida, Glyceridae).
Richter S; Schwarz F; Hering L; Böggemann M; Bleidorn C
Genome Biol Evol; 2015 Nov; 7(12):3443-62. PubMed ID: 26590213
[TBL] [Abstract][Full Text] [Related]
11. Different phylogenomic approaches to resolve the evolutionary relationships among model fish species.
Negrisolo E; Kuhl H; Forcato C; Vitulo N; Reinhardt R; Patarnello T; Bargelloni L
Mol Biol Evol; 2010 Dec; 27(12):2757-74. PubMed ID: 20591844
[TBL] [Abstract][Full Text] [Related]
12. Phylogenomic analyses data of the avian phylogenomics project.
Jarvis ED; Mirarab S; Aberer AJ; Li B; Houde P; Li C; Ho SY; Faircloth BC; Nabholz B; Howard JT; Suh A; Weber CC; da Fonseca RR; Alfaro-Núñez A; Narula N; Liu L; Burt D; Ellegren H; Edwards SV; Stamatakis A; Mindell DP; Cracraft J; Braun EL; Warnow T; Jun W; Gilbert MT; Zhang G;
Gigascience; 2015; 4():4. PubMed ID: 25741440
[TBL] [Abstract][Full Text] [Related]
13. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
14. A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study.
Li C; Ortí G; Zhang G; Lu G
BMC Evol Biol; 2007 Mar; 7():44. PubMed ID: 17374158
[TBL] [Abstract][Full Text] [Related]
15. Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae.
Steele PR; Hertweck KL; Mayfield D; McKain MR; Leebens-Mack J; Pires JC
Am J Bot; 2012 Feb; 99(2):330-48. PubMed ID: 22291168
[TBL] [Abstract][Full Text] [Related]
16. How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards.
Streicher JW; Schulte JA; Wiens JJ
Syst Biol; 2016 Jan; 65(1):128-45. PubMed ID: 26330450
[TBL] [Abstract][Full Text] [Related]
17. Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.
Lugli GA; Milani C; Duranti S; Mancabelli L; Mangifesta M; Turroni F; Viappiani A; van Sinderen D; Ventura M
Appl Environ Microbiol; 2018 Feb; 84(4):. PubMed ID: 29222102
[TBL] [Abstract][Full Text] [Related]
18. Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.
Taylor JF; Whitacre LK; Hoff JL; Tizioto PC; Kim J; Decker JE; Schnabel RD
Genet Sel Evol; 2016 Aug; 48(1):59. PubMed ID: 27534529
[TBL] [Abstract][Full Text] [Related]
19. Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards.
Blom MPK; Bragg JG; Potter S; Moritz C
Syst Biol; 2017 May; 66(3):352-366. PubMed ID: 28039387
[TBL] [Abstract][Full Text] [Related]
20. Phylogenomics of a rapid radiation: the Australian rainbow skinks.
Bragg JG; Potter S; Afonso Silva AC; Hoskin CJ; Bai BYH; Moritz C
BMC Evol Biol; 2018 Feb; 18(1):15. PubMed ID: 29402211
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
