BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 28130228)

  • 1. Ligandbook: an online repository for small and drug-like molecule force field parameters.
    Domanski J; Beckstein O; Iorga BI
    Bioinformatics; 2017 Jun; 33(11):1747-1749. PubMed ID: 28130228
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sequencing data discovery with MetaSeek.
    Hoarfrost A; Brown N; Brown CT; Arnosti C
    Bioinformatics; 2019 Nov; 35(22):4857-4859. PubMed ID: 31225863
    [TBL] [Abstract][Full Text] [Related]  

  • 3. JASPAR RESTful API: accessing JASPAR data from any programming language.
    Khan A; Mathelier A
    Bioinformatics; 2018 May; 34(9):1612-1614. PubMed ID: 29253085
    [TBL] [Abstract][Full Text] [Related]  

  • 4. quincunx: an R package to query, download and wrangle PGS Catalog data.
    Magno R; Duarte I; Maia AT
    Bioinformatics; 2021 Dec; 38(1):294-296. PubMed ID: 34270693
    [TBL] [Abstract][Full Text] [Related]  

  • 5. grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
    Taylor LJ; Abbas A; Bushman FD
    Bioinformatics; 2020 Jun; 36(11):3607-3609. PubMed ID: 32154830
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Lipidbook: a public repository for force-field parameters used in membrane simulations.
    Domański J; Stansfeld PJ; Sansom MS; Beckstein O
    J Membr Biol; 2010 Aug; 236(3):255-8. PubMed ID: 20700585
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FastTargetPred: a program enabling the fast prediction of putative protein targets for input chemical databases.
    Chaput L; Guillaume V; Singh N; Deprez B; Villoutreix BO
    Bioinformatics; 2020 Aug; 36(14):4225-4226. PubMed ID: 32399567
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.
    Tahsin T; Weissenbacher D; O'Connor K; Magge A; Scotch M; Gonzalez-Hernandez G
    Bioinformatics; 2018 May; 34(9):1606-1608. PubMed ID: 29240889
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The NanoFlow Repository.
    Arce JE; Welsh JA; Cook S; Tigges J; Ghiran I; Jones JC; Jackson A; Roth M; Milosavljevic A
    Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37285317
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data.
    Nair S; Váradi M; Nadzirin N; Pravda L; Anyango S; Mir S; Berrisford J; Armstrong D; Gutmanas A; Velankar S
    Bioinformatics; 2021 Nov; 37(21):3950-3952. PubMed ID: 34081107
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BioLit: integrating biological literature with databases.
    Fink JL; Kushch S; Williams PR; Bourne PE
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W385-9. PubMed ID: 18515836
    [TBL] [Abstract][Full Text] [Related]  

  • 12. LigDig: a web server for querying ligand-protein interactions.
    Fuller JC; Martinez M; Henrich S; Stank A; Richter S; Wade RC
    Bioinformatics; 2015 Apr; 31(7):1147-9. PubMed ID: 25433696
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FreeSolv: a database of experimental and calculated hydration free energies, with input files.
    Mobley DL; Guthrie JP
    J Comput Aided Mol Des; 2014 Jul; 28(7):711-20. PubMed ID: 24928188
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
    Magge A; Weissenbacher D; O'Connor K; Tahsin T; Gonzalez-Hernandez G; Scotch M
    Bioinformatics; 2020 Dec; 36(20):5120-5121. PubMed ID: 32683454
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Epock: rapid analysis of protein pocket dynamics.
    Laurent B; Chavent M; Cragnolini T; Dahl AC; Pasquali S; Derreumaux P; Sansom MS; Baaden M
    Bioinformatics; 2015 May; 31(9):1478-80. PubMed ID: 25505095
    [TBL] [Abstract][Full Text] [Related]  

  • 16. cgHeliParm: analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations.
    Faustino I; Marrink SJ
    Bioinformatics; 2017 Dec; 33(23):3813-3815. PubMed ID: 29036584
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TOXsIgN: a cross-species repository for toxicogenomic signatures.
    Darde TA; Gaudriault P; Beranger R; Lancien C; Caillarec-Joly A; Sallou O; Bonvallot N; Chevrier C; Mazaud-Guittot S; Jégou B; Collin O; Becker E; Rolland AD; Chalmel F
    Bioinformatics; 2018 Jun; 34(12):2116-2122. PubMed ID: 29385404
    [TBL] [Abstract][Full Text] [Related]  

  • 18. LAILAPS-QSM: A RESTful API and JAVA library for semantic query suggestions.
    Chen J; Scholz U; Zhou R; Lange M
    PLoS Comput Biol; 2018 Mar; 14(3):e1006058. PubMed ID: 29529024
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bioactive Conformational Ensemble Server and Database. A Public Framework to Speed Up
    Zivanovic S; Bayarri G; Colizzi F; Moreno D; Gelpí JL; Soliva R; Hospital A; Orozco M
    J Chem Theory Comput; 2020 Oct; 16(10):6586-6597. PubMed ID: 32786900
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detecting and correcting misclassified sequences in the large-scale public databases.
    Bagheri H; Severin AJ; Rajan H
    Bioinformatics; 2020 Sep; 36(18):4699-4705. PubMed ID: 32579213
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.