BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 28138848)

  • 1. Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping.
    McElwain MA; Zhang RY; Drmanac R; Peters BA
    Methods Mol Biol; 2017; 1551():191-205. PubMed ID: 28138848
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accurate Sequencing and Haplotyping from 10 Cells Using Long Fragment Read (LFR) Technology.
    McElwain MA; Peters BA
    Methods Mol Biol; 2023; 2590():71-84. PubMed ID: 36335493
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
    Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
    Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
    Wang O; Chin R; Cheng X; Wu MKY; Mao Q; Tang J; Sun Y; Anderson E; Lam HK; Chen D; Zhou Y; Wang L; Fan F; Zou Y; Xie Y; Zhang RY; Drmanac S; Nguyen D; Xu C; Villarosa C; Gablenz S; Barua N; Nguyen S; Tian W; Liu JS; Wang J; Liu X; Qi X; Chen A; Wang H; Dong Y; Zhang W; Alexeev A; Yang H; Wang J; Kristiansen K; Xu X; Drmanac R; Peters BA
    Genome Res; 2019 May; 29(5):798-808. PubMed ID: 30940689
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.
    Peters BA; Kermani BG; Sparks AB; Alferov O; Hong P; Alexeev A; Jiang Y; Dahl F; Tang YT; Haas J; Robasky K; Zaranek AW; Lee JH; Ball MP; Peterson JE; Perazich H; Yeung G; Liu J; Chen L; Kennemer MI; Pothuraju K; Konvicka K; Tsoupko-Sitnikov M; Pant KP; Ebert JC; Nilsen GB; Baccash J; Halpern AL; Church GM; Drmanac R
    Nature; 2012 Jul; 487(7406):190-5. PubMed ID: 22785314
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Simple Cost-Effective Method for Whole-Genome Sequencing, Haplotyping, and Assembly.
    Wang O; Cheng X; Drmanac R; Peters BA
    Methods Mol Biol; 2023; 2590():101-125. PubMed ID: 36335495
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Whole-genome haplotyping by dilution, amplification, and sequencing.
    Kaper F; Swamy S; Klotzle B; Munchel S; Cottrell J; Bibikova M; Chuang HY; Kruglyak S; Ronaghi M; Eberle MA; Fan JB
    Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5552-7. PubMed ID: 23509297
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes.
    Mao Q; Ciotlos S; Zhang RY; Ball MP; Chin R; Carnevali P; Barua N; Nguyen S; Agarwal MR; Clegg T; Connelly A; Vandewege W; Zaranek AW; Estep PW; Church GM; Drmanac R; Peters BA
    Gigascience; 2016 Oct; 5(1):42. PubMed ID: 27724973
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
    Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
    Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Haplotype phasing in single-cell DNA-sequencing data.
    Satas G; Raphael BJ
    Bioinformatics; 2018 Jul; 34(13):i211-i217. PubMed ID: 29950014
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ultraaccurate genome sequencing and haplotyping of single human cells.
    Chu WK; Edge P; Lee HS; Bansal V; Bafna V; Huang X; Zhang K
    Proc Natl Acad Sci U S A; 2017 Nov; 114(47):12512-12517. PubMed ID: 29078313
    [TBL] [Abstract][Full Text] [Related]  

  • 12. WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
    Patterson M; Marschall T; Pisanti N; van Iersel L; Stougie L; Klau GW; Schönhuth A
    J Comput Biol; 2015 Jun; 22(6):498-509. PubMed ID: 25658651
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PWHATSHAP: efficient haplotyping for future generation sequencing.
    Bracciali A; Aldinucci M; Patterson M; Marschall T; Pisanti N; Merelli I; Torquati M
    BMC Bioinformatics; 2016 Sep; 17(Suppl 11):342. PubMed ID: 28185544
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.
    Zheng GX; Lau BT; Schnall-Levin M; Jarosz M; Bell JM; Hindson CM; Kyriazopoulou-Panagiotopoulou S; Masquelier DA; Merrill L; Terry JM; Mudivarti PA; Wyatt PW; Bharadwaj R; Makarewicz AJ; Li Y; Belgrader P; Price AD; Lowe AJ; Marks P; Vurens GM; Hardenbol P; Montesclaros L; Luo M; Greenfield L; Wong A; Birch DE; Short SW; Bjornson KP; Patel P; Hopmans ES; Wood C; Kaur S; Lockwood GK; Stafford D; Delaney JP; Wu I; Ordonez HS; Grimes SM; Greer S; Lee JY; Belhocine K; Giorda KM; Heaton WH; McDermott GP; Bent ZW; Meschi F; Kondov NO; Wilson R; Bernate JA; Gauby S; Kindwall A; Bermejo C; Fehr AN; Chan A; Saxonov S; Ness KD; Hindson BJ; Ji HP
    Nat Biotechnol; 2016 Mar; 34(3):303-11. PubMed ID: 26829319
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long-read-based single sperm genome sequencing for chromosome-wide haplotype phasing of both SNPs and SVs.
    Xie H; Li W; Guo Y; Su X; Chen K; Wen L; Tang F
    Nucleic Acids Res; 2023 Aug; 51(15):8020-8034. PubMed ID: 37351613
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A comparative study of k-spectrum-based error correction methods for next-generation sequencing data analysis.
    Akogwu I; Wang N; Zhang C; Gong P
    Hum Genomics; 2016 Jul; 10 Suppl 2(Suppl 2):20. PubMed ID: 27461106
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A hybrid approach for de novo human genome sequence assembly and phasing.
    Mostovoy Y; Levy-Sakin M; Lam J; Lam ET; Hastie AR; Marks P; Lee J; Chu C; Lin C; Džakula Ž; Cao H; Schlebusch SA; Giorda K; Schnall-Levin M; Wall JD; Kwok PY
    Nat Methods; 2016 Jul; 13(7):587-90. PubMed ID: 27159086
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Preprocessing and Quality Control for Whole-Genome Sequences from the Illumina HiSeq X Platform.
    Wright MN; Gola D; Ziegler A
    Methods Mol Biol; 2017; 1666():629-647. PubMed ID: 28980267
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.
    Höjer P; Frick T; Siga H; Pourbozorgi P; Aghelpasand H; Martin M; Ahmadian A
    Nucleic Acids Res; 2023 Dec; 51(22):e114. PubMed ID: 37941142
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates.
    Leung K; Klaus A; Lin BK; Laks E; Biele J; Lai D; Bashashati A; Huang YF; Aniba R; Moksa M; Steif A; Mes-Masson AM; Hirst M; Shah SP; Aparicio S; Hansen CL
    Proc Natl Acad Sci U S A; 2016 Jul; 113(30):8484-9. PubMed ID: 27412862
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.