BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 28145456)

  • 1. Enhancing gene regulatory network inference through data integration with markov random fields.
    Banf M; Rhee SY
    Sci Rep; 2017 Feb; 7():41174. PubMed ID: 28145456
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
    Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
    Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Boolean modeling of biological regulatory networks: a methodology tutorial.
    Saadatpour A; Albert R
    Methods; 2013 Jul; 62(1):3-12. PubMed ID: 23142247
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits.
    Megraw M; Mukherjee S; Ohler U
    Genome Biol; 2013 Aug; 14(8):R85. PubMed ID: 23972209
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RESQUE: network reduction using semi-Markov random walk scores for efficient querying of biological networks.
    Sahraeian SM; Yoon BJ
    Bioinformatics; 2012 Aug; 28(16):2129-36. PubMed ID: 22730436
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient reverse-engineering of a developmental gene regulatory network.
    Crombach A; Wotton KR; Cicin-Sain D; Ashyraliyev M; Jaeger J
    PLoS Comput Biol; 2012; 8(7):e1002589. PubMed ID: 22807664
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A Novel Model Integration Network Inference Algorithm with Clustering and Hub Genes Finding.
    Li W; Zhang W; Zhang J
    Mol Inform; 2020 May; 39(5):e1900075. PubMed ID: 31990443
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes.
    Grzegorczyk M; Husmeier D
    Bioinformatics; 2011 Mar; 27(5):693-9. PubMed ID: 21177328
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information.
    Kulkarni SR; Vaneechoutte D; Van de Velde J; Vandepoele K
    Nucleic Acids Res; 2018 Apr; 46(6):e31. PubMed ID: 29272447
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Netter: re-ranking gene network inference predictions using structural network properties.
    Ruyssinck J; Demeester P; Dhaene T; Saeys Y
    BMC Bioinformatics; 2016 Feb; 17():76. PubMed ID: 26862054
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fuzzy based algorithms to predict MicroRNA regulated protein interaction pathways and ranking estimation in Arabidopsis thaliana.
    Manikandan P; Ramyachitra D; Nandhini R
    Gene; 2019 Apr; 692():170-175. PubMed ID: 30641215
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Integrative Approaches for Inference of Genome-Scale Gene Regulatory Networks.
    Siahpirani AF; Chasman D; Roy S
    Methods Mol Biol; 2019; 1883():161-194. PubMed ID: 30547400
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Prediction of regulatory interactions in Arabidopsis using gene-expression data and support vector machines.
    Yu X; Liu T; Zheng X; Yang Z; Wang J
    Plant Physiol Biochem; 2011 Mar; 49(3):280-3. PubMed ID: 21282061
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Refining regulatory networks through phylogenetic transfer of information.
    Zhang X; Moret BM
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):1032-45. PubMed ID: 22547434
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Statistical inference of regulatory networks for circadian regulation.
    Aderhold A; Husmeier D; Grzegorczyk M
    Stat Appl Genet Mol Biol; 2014 Jun; 13(3):227-73. PubMed ID: 24864301
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana.
    Yu X; Li L; Zola J; Aluru M; Ye H; Foudree A; Guo H; Anderson S; Aluru S; Liu P; Rodermel S; Yin Y
    Plant J; 2011 Feb; 65(4):634-46. PubMed ID: 21214652
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring the regulatory interaction models of transcription factors in transcriptional regulatory networks.
    Awad S; Panchy N; Ng SK; Chen J
    J Bioinform Comput Biol; 2012 Oct; 10(5):1250012. PubMed ID: 22849367
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multi-species network inference improves gene regulatory network reconstruction for early embryonic development in Drosophila.
    Joshi A; Beck Y; Michoel T
    J Comput Biol; 2015 Apr; 22(4):253-65. PubMed ID: 25844666
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Transcriptional control in the segmentation gene network of Drosophila.
    Schroeder MD; Pearce M; Fak J; Fan H; Unnerstall U; Emberly E; Rajewsky N; Siggia ED; Gaul U
    PLoS Biol; 2004 Sep; 2(9):E271. PubMed ID: 15340490
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Computational inference of gene regulatory networks: Approaches, limitations and opportunities.
    Banf M; Rhee SY
    Biochim Biophys Acta Gene Regul Mech; 2017 Jan; 1860(1):41-52. PubMed ID: 27641093
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.