175 related articles for article (PubMed ID: 28150233)
21. Evaluating the significance of protein functional similarity based on gene ontology.
Konopka BM; Golda T; Kotulska M
J Comput Biol; 2014 Nov; 21(11):809-22. PubMed ID: 25188814
[TBL] [Abstract][Full Text] [Related]
22. The representation of protein complexes in the Protein Ontology (PRO).
Bult CJ; Drabkin HJ; Evsikov A; Natale D; Arighi C; Roberts N; Ruttenberg A; D'Eustachio P; Smith B; Blake JA; Wu C
BMC Bioinformatics; 2011 Sep; 12():371. PubMed ID: 21929785
[TBL] [Abstract][Full Text] [Related]
23. Semi-automated ontology generation within OBO-Edit.
Wächter T; Schroeder M
Bioinformatics; 2010 Jun; 26(12):i88-96. PubMed ID: 20529942
[TBL] [Abstract][Full Text] [Related]
24. Preliminary Analysis of the OBO Foundry Ontologies and Their Evolution Using OQuaRE.
Quesada-Martínez M; Duque-Ramos A; Iniesta-Moreno M; Fernández-Breis JT
Stud Health Technol Inform; 2017; 235():426-430. PubMed ID: 28423828
[TBL] [Abstract][Full Text] [Related]
25. OBO-Edit--an ontology editor for biologists.
Day-Richter J; Harris MA; Haendel M; ; Lewis S
Bioinformatics; 2007 Aug; 23(16):2198-200. PubMed ID: 17545183
[TBL] [Abstract][Full Text] [Related]
26. Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework.
Arighi C; Shamovsky V; Masci AM; Ruttenberg A; Smith B; Natale DA; Wu C; D'Eustachio P
PLoS One; 2015; 10(3):e0122978. PubMed ID: 25894391
[TBL] [Abstract][Full Text] [Related]
27. The Protein Ontology: a structured representation of protein forms and complexes.
Natale DA; Arighi CN; Barker WC; Blake JA; Bult CJ; Caudy M; Drabkin HJ; D'Eustachio P; Evsikov AV; Huang H; Nchoutmboube J; Roberts NV; Smith B; Zhang J; Wu CH
Nucleic Acids Res; 2011 Jan; 39(Database issue):D539-45. PubMed ID: 20935045
[TBL] [Abstract][Full Text] [Related]
28. The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff AM; Glover NM; Train CM; Kaleb K; Warwick Vesztrocy A; Dylus D; de Farias TM; Zile K; Stevenson C; Long J; Redestig H; Gonnet GH; Dessimoz C
Nucleic Acids Res; 2018 Jan; 46(D1):D477-D485. PubMed ID: 29106550
[TBL] [Abstract][Full Text] [Related]
29. CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences.
Dawson NL; Sillitoe I; Lees JG; Lam SD; Orengo CA
Methods Mol Biol; 2017; 1558():79-110. PubMed ID: 28150234
[TBL] [Abstract][Full Text] [Related]
30. PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.
Mi H; Huang X; Muruganujan A; Tang H; Mills C; Kang D; Thomas PD
Nucleic Acids Res; 2017 Jan; 45(D1):D183-D189. PubMed ID: 27899595
[TBL] [Abstract][Full Text] [Related]
31. Owlready: Ontology-oriented programming in Python with automatic classification and high level constructs for biomedical ontologies.
Lamy JB
Artif Intell Med; 2017 Jul; 80():11-28. PubMed ID: 28818520
[TBL] [Abstract][Full Text] [Related]
32. Annotating Mutational Effects on Proteins and Protein Interactions: Designing Novel and Revisiting Existing Protocols.
Li M; Goncearenco A; Panchenko AR
Methods Mol Biol; 2017; 1550():235-260. PubMed ID: 28188534
[TBL] [Abstract][Full Text] [Related]
33. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.
Zdobnov EM; Tegenfeldt F; Kuznetsov D; Waterhouse RM; Simão FA; Ioannidis P; Seppey M; Loetscher A; Kriventseva EV
Nucleic Acids Res; 2017 Jan; 45(D1):D744-D749. PubMed ID: 27899580
[TBL] [Abstract][Full Text] [Related]
34. A top-level ontology of functions and its application in the Open Biomedical Ontologies.
Burek P; Hoehndorf R; Loebe F; Visagie J; Herre H; Kelso J
Bioinformatics; 2006 Jul; 22(14):e66-73. PubMed ID: 16873523
[TBL] [Abstract][Full Text] [Related]
35. MalaCards: an amalgamated human disease compendium with diverse clinical and genetic annotation and structured search.
Rappaport N; Twik M; Plaschkes I; Nudel R; Iny Stein T; Levitt J; Gershoni M; Morrey CP; Safran M; Lancet D
Nucleic Acids Res; 2017 Jan; 45(D1):D877-D887. PubMed ID: 27899610
[TBL] [Abstract][Full Text] [Related]
36. Impact of Nonsynonymous Single-Nucleotide Variations on Post-Translational Modification Sites in Human Proteins.
Gulzar N; Dingerdissen H; Yan C; Mazumder R
Methods Mol Biol; 2017; 1558():159-190. PubMed ID: 28150238
[TBL] [Abstract][Full Text] [Related]
37. Annotation of Alternatively Spliced Proteins and Transcripts with Protein-Folding Algorithms and Isoform-Level Functional Networks.
Li H; Zhang Y; Guan Y; Menon R; Omenn GS
Methods Mol Biol; 2017; 1558():415-436. PubMed ID: 28150250
[TBL] [Abstract][Full Text] [Related]
38. Evolution of the Sequence Ontology terms and relationships.
Mungall CJ; Batchelor C; Eilbeck K
J Biomed Inform; 2011 Feb; 44(1):87-93. PubMed ID: 20226267
[TBL] [Abstract][Full Text] [Related]
39. CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation.
Yu CS; Cheng CW; Su WC; Chang KC; Huang SW; Hwang JK; Lu CH
PLoS One; 2014; 9(6):e99368. PubMed ID: 24911789
[TBL] [Abstract][Full Text] [Related]
40. Software Suite for Gene and Protein Annotation Prediction and Similarity Search.
Chicco D; Masseroli M
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(4):837-43. PubMed ID: 26357324
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]