BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 28150251)

  • 1. Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis.
    Schwämmle V; Vaudel M
    Methods Mol Biol; 2017; 1558():437-458. PubMed ID: 28150251
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
    Ma CW; Lam H
    J Proteome Res; 2014 May; 13(5):2262-71. PubMed ID: 24661115
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Software eyes for protein post-translational modifications.
    Na S; Paek E
    Mass Spectrom Rev; 2015; 34(2):133-47. PubMed ID: 24889695
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Unrestrictive identification of post-translational modifications through peptide mass spectrometry.
    Tanner S; Pevzner PA; Bafna V
    Nat Protoc; 2006; 1(1):67-72. PubMed ID: 17406213
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.
    Nanni P; Panse C; Gehrig P; Mueller S; Grossmann J; Schlapbach R
    Proteomics; 2013 Aug; 13(15):2251-5. PubMed ID: 23713006
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
    Zamdborg L; LeDuc RD; Glowacz KJ; Kim YB; Viswanathan V; Spaulding IT; Early BP; Bluhm EJ; Babai S; Kelleher NL
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W701-6. PubMed ID: 17586823
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Clinically Relevant Post-Translational Modification Analyses-Maturing Workflows and Bioinformatics Tools.
    Pascovici D; Wu JX; McKay MJ; Joseph C; Noor Z; Kamath K; Wu Y; Ranganathan S; Gupta V; Mirzaei M
    Int J Mol Sci; 2018 Dec; 20(1):. PubMed ID: 30577541
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Existing bioinformatics tools for the quantitation of post-translational modifications.
    Allmer J
    Amino Acids; 2012 Jan; 42(1):129-38. PubMed ID: 20473535
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PIPI2: Sensitive Tag-Based Database Search to Identify Peptides with Multiple Post-translational Modifications.
    Lai S; Zhao P; Zhou C; Li N; Yu W
    J Proteome Res; 2024 Jun; 23(6):1960-1969. PubMed ID: 38770571
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A collection of open source applications for mass spectrometry data mining.
    Gallardo Ó; Ovelleiro D; Gay M; Carrascal M; Abian J
    Proteomics; 2014 Oct; 14(20):2275-9. PubMed ID: 25055762
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bioinformatics challenges in mass spectrometry-driven proteomics.
    Martens L
    Methods Mol Biol; 2011; 753():359-71. PubMed ID: 21604135
    [TBL] [Abstract][Full Text] [Related]  

  • 13. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
    Ning K; Ng HK; Leong HW
    Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Andromeda: a peptide search engine integrated into the MaxQuant environment.
    Cox J; Neuhauser N; Michalski A; Scheltema RA; Olsen JV; Mann M
    J Proteome Res; 2011 Apr; 10(4):1794-805. PubMed ID: 21254760
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bioinformatic challenges in targeted proteomics.
    Reker D; Malmström L
    J Proteome Res; 2012 Sep; 11(9):4393-402. PubMed ID: 22866949
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra.
    Kim S; Na S; Sim JW; Park H; Jeong J; Kim H; Seo Y; Seo J; Lee KJ; Paek E
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W258-63. PubMed ID: 16845006
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.
    Naegle KM; Gymrek M; Joughin BA; Wagner JP; Welsch RE; Yaffe MB; Lauffenburger DA; White FM
    Mol Cell Proteomics; 2010 Nov; 9(11):2558-70. PubMed ID: 20631208
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Proteomic databases and tools to decipher post-translational modifications.
    Kamath KS; Vasavada MS; Srivastava S
    J Proteomics; 2011 Dec; 75(1):127-44. PubMed ID: 21983556
    [TBL] [Abstract][Full Text] [Related]  

  • 19. UniProt Protein Knowledgebase.
    Pundir S; Martin MJ; O'Donovan C
    Methods Mol Biol; 2017; 1558():41-55. PubMed ID: 28150232
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Unrestricted identification of modified proteins using MS/MS.
    Ahrné E; Müller M; Lisacek F
    Proteomics; 2010 Feb; 10(4):671-86. PubMed ID: 20029840
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.