256 related articles for article (PubMed ID: 28155725)
1. MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks.
Truong CD; Tran TD; Kwon YK
BMC Syst Biol; 2016 Dec; 10(Suppl 4):122. PubMed ID: 28155725
[TBL] [Abstract][Full Text] [Related]
2. Investigation on changes of modularity and robustness by edge-removal mutations in signaling networks.
Truong CD; Kwon YK
BMC Syst Biol; 2017 Dec; 11(Suppl 7):125. PubMed ID: 29322936
[TBL] [Abstract][Full Text] [Related]
3. PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks.
Trinh HC; Le DH; Kwon YK
PLoS One; 2014; 9(7):e103010. PubMed ID: 25058310
[TBL] [Abstract][Full Text] [Related]
4. GNC-app: A new Cytoscape app to rate gene networks biological coherence using gene-gene indirect relationships.
Díaz-Montaña JJ; Gómez-Vela F; Díaz-Díaz N
Biosystems; 2018 Apr; 166():61-65. PubMed ID: 29408296
[TBL] [Abstract][Full Text] [Related]
5. Development and use of a Cytoscape app for GRNCOP2.
Díaz-Montaña JJ; Díaz-Díaz N; Barranco CD; Ponzoni I
Comput Methods Programs Biomed; 2019 Aug; 177():211-218. PubMed ID: 31319950
[TBL] [Abstract][Full Text] [Related]
6. CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks.
Paroni A; Graudenzi A; Caravagna G; Damiani C; Mauri G; Antoniotti M
BMC Bioinformatics; 2016 Feb; 17():64. PubMed ID: 26846964
[TBL] [Abstract][Full Text] [Related]
7. C-Biomarker.net: A Cytoscape app for the identification of cancer biomarker genes from cores of large biomolecular networks.
Tran TD; Nguyen MT
Biosystems; 2023 Apr; 226():104887. PubMed ID: 36990379
[TBL] [Abstract][Full Text] [Related]
8. Expression-based network biology identifies immune-related functional modules involved in plant defense.
Tully JP; Hill AE; Ahmed HM; Whitley R; Skjellum A; Mukhtar MS
BMC Genomics; 2014 Jun; 15():421. PubMed ID: 24888606
[TBL] [Abstract][Full Text] [Related]
9. Analysis and Visualization of Dynamic Networks Using the DyNet App for Cytoscape.
Salamon J; Goenawan IH; Lynn DJ
Curr Protoc Bioinformatics; 2018 Sep; 63(1):e55. PubMed ID: 30168906
[TBL] [Abstract][Full Text] [Related]
10. The relationship between modularity and robustness in signalling networks.
Tran TD; Kwon YK
J R Soc Interface; 2013 Nov; 10(88):20130771. PubMed ID: 24047877
[TBL] [Abstract][Full Text] [Related]
11. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of protein interaction networks.
Tang Y; Li M; Wang J; Pan Y; Wu FX
Biosystems; 2015 Jan; 127():67-72. PubMed ID: 25451770
[TBL] [Abstract][Full Text] [Related]
12. Modularity detection in protein-protein interaction networks.
Narayanan T; Gersten M; Subramaniam S; Grama A
BMC Res Notes; 2011 Dec; 4():569. PubMed ID: 22206604
[TBL] [Abstract][Full Text] [Related]
13. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
Doncheva NT; Morris JH; Gorodkin J; Jensen LJ
J Proteome Res; 2019 Feb; 18(2):623-632. PubMed ID: 30450911
[TBL] [Abstract][Full Text] [Related]
14. CytoCluster: A Cytoscape Plugin for Cluster Analysis and Visualization of Biological Networks.
Li M; Li D; Tang Y; Wu F; Wang J
Int J Mol Sci; 2017 Aug; 18(9):. PubMed ID: 28858211
[TBL] [Abstract][Full Text] [Related]
15. Visualize omics data on networks with Omics Visualizer, a Cytoscape App.
Legeay M; Doncheva NT; Morris JH; Jensen LJ
F1000Res; 2020; 9():157. PubMed ID: 32399202
[TBL] [Abstract][Full Text] [Related]
16. CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.
Kittas A; Barozet A; Sereshti J; Grabe N; Tsoka S
BMC Syst Biol; 2015 Jul; 9():34. PubMed ID: 26163265
[TBL] [Abstract][Full Text] [Related]
17. KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.
Alcaraz N; Pauling J; Batra R; Barbosa E; Junge A; Christensen AG; Azevedo V; Ditzel HJ; Baumbach J
BMC Syst Biol; 2014 Aug; 8():99. PubMed ID: 25134827
[TBL] [Abstract][Full Text] [Related]
18. DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts.
Czerwinska U; Calzone L; Barillot E; Zinovyev A
BMC Syst Biol; 2015 Aug; 9():46. PubMed ID: 26271256
[TBL] [Abstract][Full Text] [Related]
19. Phylogenetic analysis of modularity in protein interaction networks.
Erten S; Li X; Bebek G; Li J; Koyutürk M
BMC Bioinformatics; 2009 Oct; 10():333. PubMed ID: 19828041
[TBL] [Abstract][Full Text] [Related]
20. Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.
Mustafin ZS; Lashin SA; Matushkin YG; Gunbin KV; Afonnikov DA
BMC Bioinformatics; 2017 Jan; 18(Suppl 1):1427. PubMed ID: 28466792
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
