257 related articles for article (PubMed ID: 28155725)
21. Dynamical and topological robustness of the mammalian cell cycle network: a reverse engineering approach.
Ruz GA; Goles E; Montalva M; Fogel GB
Biosystems; 2014 Jan; 115():23-32. PubMed ID: 24212100
[TBL] [Abstract][Full Text] [Related]
22. ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network.
Wang J; Zhong J; Chen G; Li M; Wu FX; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(4):815-22. PubMed ID: 26357321
[TBL] [Abstract][Full Text] [Related]
23. Robustness modularity in complex networks.
Silva FN; Albeshri A; Thayananthan V; Alhalabi W; Fortunato S
Phys Rev E; 2022 May; 105(5-1):054308. PubMed ID: 35706196
[TBL] [Abstract][Full Text] [Related]
24. Protein-Protein Interaction Network Exploration Using Cytoscape.
Majeed A; Mukhtar S
Methods Mol Biol; 2023; 2690():419-427. PubMed ID: 37450163
[TBL] [Abstract][Full Text] [Related]
25. Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.
Puig RR; Holmås S; Mironov V; Kuiper M
Curr Protoc Bioinformatics; 2020 Dec; 72(1):e106. PubMed ID: 32986267
[TBL] [Abstract][Full Text] [Related]
26. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
Li M; Yang J; Wu FX; Pan Y; Wang J
Bioinformatics; 2018 May; 34(9):1597-1599. PubMed ID: 29293938
[TBL] [Abstract][Full Text] [Related]
27. Modularity of biological systems: a link between structure and function.
Kadelka C; Wheeler M; Veliz-Cuba A; Murrugarra D; Laubenbacher R
bioRxiv; 2023 Sep; ():. PubMed ID: 37745485
[TBL] [Abstract][Full Text] [Related]
28. A Cytoscape app for motif enumeration with ISMAGS.
Van Parys T; Melckenbeeck I; Houbraken M; Audenaert P; Colle D; Pickavet M; Demeester P; Van de Peer Y
Bioinformatics; 2017 Feb; 33(3):461-463. PubMed ID: 28158465
[TBL] [Abstract][Full Text] [Related]
29. Phylogenetic analysis of modularity in protein interaction networks.
Erten S; Li X; Bebek G; Li J; Koyutürk M
BMC Bioinformatics; 2009 Oct; 10():333. PubMed ID: 19828041
[TBL] [Abstract][Full Text] [Related]
30. Comprehensive functional analysis of large lists of genes and proteins.
Mlecnik B; Galon J; Bindea G
J Proteomics; 2018 Jan; 171():2-10. PubMed ID: 28343001
[TBL] [Abstract][Full Text] [Related]
31. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.
König M; Holzhütter HG
Genome Inform; 2010; 24():96-103. PubMed ID: 22081592
[TBL] [Abstract][Full Text] [Related]
32. Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks.
Xu Y; Guo M; Liu X; Wang C; Liu Y; Liu G
Nucleic Acids Res; 2016 Nov; 44(20):e152. PubMed ID: 27484480
[TBL] [Abstract][Full Text] [Related]
33. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis.
Wu L; Li M; Wang J; Wu FX
Bioinformatics; 2018 Apr; 34(8):1428-1430. PubMed ID: 29186337
[TBL] [Abstract][Full Text] [Related]
34. NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks.
Le DH; Kwon YK
Bioinformatics; 2011 Oct; 27(19):2767-8. PubMed ID: 21828085
[TBL] [Abstract][Full Text] [Related]
35. DyNet: visualization and analysis of dynamic molecular interaction networks.
Goenawan IH; Bryan K; Lynn DJ
Bioinformatics; 2016 Sep; 32(17):2713-5. PubMed ID: 27153624
[TBL] [Abstract][Full Text] [Related]
36. CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks.
Masoudi-Nejad A; Ansariola M; Kashani ZR; Salehzadeh-Yazdi A; Khakabimamaghani S
PLoS One; 2012; 7(8):e43287. PubMed ID: 22952659
[TBL] [Abstract][Full Text] [Related]
37. Integration of genomic information with biological networks using Cytoscape.
Bauer-Mehren A
Methods Mol Biol; 2013; 1021():37-61. PubMed ID: 23715979
[TBL] [Abstract][Full Text] [Related]
38. Structure discovery in PPI networks using pattern-based network decomposition.
Bachman P; Liu Y
Bioinformatics; 2009 Jul; 25(14):1814-21. PubMed ID: 19447784
[TBL] [Abstract][Full Text] [Related]
39. Identification of key genes and crucial modules associated with coronary artery disease by bioinformatics analysis.
Zhang X; Cheng X; Liu H; Zheng C; Rao K; Fang Y; Zhou H; Xiong S
Int J Mol Med; 2014 Sep; 34(3):863-9. PubMed ID: 24969630
[TBL] [Abstract][Full Text] [Related]
40. OCSANA+: optimal control and simulation of signaling networks from network analysis.
Marazzi L; Gainer-Dewar A; Vera-Licona P
Bioinformatics; 2020 Dec; 36(19):4960-4962. PubMed ID: 32879935
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
