161 related articles for article (PubMed ID: 28158838)
1. Accurately annotate compound effects of genetic variants using a context-sensitive framework.
Cheng SJ; Shi FY; Liu H; Ding Y; Jiang S; Liang N; Gao G
Nucleic Acids Res; 2017 Jun; 45(10):e82. PubMed ID: 28158838
[TBL] [Abstract][Full Text] [Related]
2. Systematic identification and annotation of multiple-variant compound effects at transcription factor binding sites in human genome.
Cheng SJ; Jiang S; Shi FY; Ding Y; Gao G
J Genet Genomics; 2018 Jul; 45(7):373-379. PubMed ID: 30054217
[TBL] [Abstract][Full Text] [Related]
3. India Allele Finder: a web-based annotation tool for identifying common alleles in next-generation sequencing data of Indian origin.
Zhang JF; James F; Shukla A; Girisha KM; Paciorkowski AR
BMC Res Notes; 2017 Jun; 10(1):233. PubMed ID: 28655339
[TBL] [Abstract][Full Text] [Related]
4. Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR.
Yang H; Wang K
Nat Protoc; 2015 Oct; 10(10):1556-66. PubMed ID: 26379229
[TBL] [Abstract][Full Text] [Related]
5. Current trend of annotating single nucleotide variation in humans--A case study on SNVrap.
Li MJ; Wang J
Methods; 2015 Jun; 79-80():32-40. PubMed ID: 25308971
[TBL] [Abstract][Full Text] [Related]
6. Using FunSeq2 for Coding and Non-Coding Variant Annotation and Prioritization.
Dhingra P; Fu Y; Gerstein M; Khurana E
Curr Protoc Bioinformatics; 2017 May; 57():15.11.1-15.11.17. PubMed ID: 28463398
[TBL] [Abstract][Full Text] [Related]
7. FEATnotator: A tool for integrated annotation of sequence features and variation, facilitating interpretation in genomics experiments.
Podicheti R; Mockaitis K
Methods; 2015 Jun; 79-80():11-7. PubMed ID: 25934264
[TBL] [Abstract][Full Text] [Related]
8. VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.
Habegger L; Balasubramanian S; Chen DZ; Khurana E; Sboner A; Harmanci A; Rozowsky J; Clarke D; Snyder M; Gerstein M
Bioinformatics; 2012 Sep; 28(17):2267-9. PubMed ID: 22743228
[TBL] [Abstract][Full Text] [Related]
9. Family genome browser: visualizing genomes with pedigree information.
Juan L; Liu Y; Wang Y; Teng M; Zang T; Wang Y
Bioinformatics; 2015 Jul; 31(14):2262-8. PubMed ID: 25788626
[TBL] [Abstract][Full Text] [Related]
10. DoriTool: A Bioinformatics Integrative Tool for Post-Association Functional Annotation.
Martín-Antoniano I; Alonso L; Madrid M; López de Maturana E; Malats N
Public Health Genomics; 2017; 20(2):126-135. PubMed ID: 28700989
[TBL] [Abstract][Full Text] [Related]
11. Beyond sequencing: re-visiting annotations for PJL as a test case.
Khan W; Ghani A; Azmi MB; Razzak SA
BMC Res Notes; 2019 Jul; 12(1):467. PubMed ID: 31366397
[TBL] [Abstract][Full Text] [Related]
12. Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes.
Das A; Panitz F; Gregersen VR; Bendixen C; Holm LE
BMC Genomics; 2015 Dec; 16():1043. PubMed ID: 26645365
[TBL] [Abstract][Full Text] [Related]
13. VarAFT: a variant annotation and filtration system for human next generation sequencing data.
Desvignes JP; Bartoli M; Delague V; Krahn M; Miltgen M; Béroud C; Salgado D
Nucleic Acids Res; 2018 Jul; 46(W1):W545-W553. PubMed ID: 29860484
[TBL] [Abstract][Full Text] [Related]
14. GSDS 2.0: an upgraded gene feature visualization server.
Hu B; Jin J; Guo AY; Zhang H; Luo J; Gao G
Bioinformatics; 2015 Apr; 31(8):1296-7. PubMed ID: 25504850
[TBL] [Abstract][Full Text] [Related]
15. Visualizing Genomic Data Using Gviz and Bioconductor.
Hahne F; Ivanek R
Methods Mol Biol; 2016; 1418():335-51. PubMed ID: 27008022
[TBL] [Abstract][Full Text] [Related]
16. In Silico Functional Annotation of Genomic Variation.
Butkiewicz M; Bush WS
Curr Protoc Hum Genet; 2016 Jan; 88():6.15.1-6.15.17. PubMed ID: 26724722
[TBL] [Abstract][Full Text] [Related]
17. Vanno: a visualization-aided variant annotation tool.
Huang PJ; Lee CC; Tan BC; Yeh YM; Huang KY; Gan RC; Chen TW; Lee CY; Yang ST; Liao CS; Liu H; Tang P
Hum Mutat; 2015 Feb; 36(2):167-74. PubMed ID: 25196204
[TBL] [Abstract][Full Text] [Related]
18. SeqAnt: a web service to rapidly identify and annotate DNA sequence variations.
Shetty AC; Athri P; Mondal K; Horner VL; Steinberg KM; Patel V; Caspary T; Cutler DJ; Zwick ME
BMC Bioinformatics; 2010 Sep; 11():471. PubMed ID: 20854673
[TBL] [Abstract][Full Text] [Related]
19. Variant Calling From Next Generation Sequence Data.
Hansen NF
Methods Mol Biol; 2016; 1418():209-24. PubMed ID: 27008017
[TBL] [Abstract][Full Text] [Related]
20. Goldmine integrates information placing genomic ranges into meaningful biological contexts.
Bhasin JM; Ting AH
Nucleic Acids Res; 2016 Jul; 44(12):5550-6. PubMed ID: 27257071
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
