137 related articles for article (PubMed ID: 28163975)
1. Use of application containers and workflows for genomic data analysis.
Schulz WL; Durant TJ; Siddon AJ; Torres R
J Pathol Inform; 2016; 7():53. PubMed ID: 28163975
[TBL] [Abstract][Full Text] [Related]
2. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.
Kim B; Ali T; Lijeron C; Afgan E; Krampis K
Gigascience; 2017 Aug; 6(8):1-7. PubMed ID: 28854616
[TBL] [Abstract][Full Text] [Related]
3. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications.
Herrick N; Walsh S
BMC Bioinformatics; 2023 Nov; 24(1):424. PubMed ID: 37940870
[TBL] [Abstract][Full Text] [Related]
4. Scalable Workflows and Reproducible Data Analysis for Genomics.
Strozzi F; Janssen R; Wurmus R; Crusoe MR; Githinji G; Di Tommaso P; Belhachemi D; Möller S; Smant G; de Ligt J; Prins P
Methods Mol Biol; 2019; 1910():723-745. PubMed ID: 31278683
[TBL] [Abstract][Full Text] [Related]
5. Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.
Baichoo S; Souilmi Y; Panji S; Botha G; Meintjes A; Hazelhurst S; Bendou H; Beste E; Mpangase PT; Souiai O; Alghali M; Yi L; O'Connor BD; Crusoe M; Armstrong D; Aron S; Joubert F; Ahmed AE; Mbiyavanga M; Heusden PV; Magosi LE; Zermeno J; Mainzer LS; Fadlelmola FM; Jongeneel CV; Mulder N
BMC Bioinformatics; 2018 Nov; 19(1):457. PubMed ID: 30486782
[TBL] [Abstract][Full Text] [Related]
6. Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines.
Allain F; Roméjon J; La Rosa P; Jarlier F; Servant N; Hupé P
Open Res Eur; 2021; 1():76. PubMed ID: 37645091
[TBL] [Abstract][Full Text] [Related]
7. MaRe: Processing Big Data with application containers on Apache Spark.
Capuccini M; Dahlö M; Toor S; Spjuth O
Gigascience; 2020 May; 9(5):. PubMed ID: 32369166
[TBL] [Abstract][Full Text] [Related]
8. Building Portable and Reproducible Cancer Informatics Workflows: An RNA Sequencing Case Study.
Kaushik G; Davis-Dusenbery B
Methods Mol Biol; 2019; 1878():39-64. PubMed ID: 30378068
[TBL] [Abstract][Full Text] [Related]
9. Closha: bioinformatics workflow system for the analysis of massive sequencing data.
Ko G; Kim PG; Yoon J; Han G; Park SJ; Song W; Lee B
BMC Bioinformatics; 2018 Feb; 19(Suppl 1):43. PubMed ID: 29504905
[TBL] [Abstract][Full Text] [Related]
10. Principles and Validation of Bioinformatics Pipeline for Cancer Next-Generation Sequencing.
Roy S
Clin Lab Med; 2022 Sep; 42(3):409-421. PubMed ID: 36150820
[TBL] [Abstract][Full Text] [Related]
11. Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform.
List M
J Integr Bioinform; 2017 Jun; 14(2):. PubMed ID: 28600904
[TBL] [Abstract][Full Text] [Related]
12. Managing genomic variant calling workflows with Swift/T.
Ahmed AE; Heldenbrand J; Asmann Y; Fadlelmola FM; Katz DS; Kendig K; Kendzior MC; Li T; Ren Y; Rodriguez E; Weber MR; Wozniak JM; Zermeno J; Mainzer LS
PLoS One; 2019; 14(7):e0211608. PubMed ID: 31287816
[TBL] [Abstract][Full Text] [Related]
13. NPARS-A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science.
Ma L; Peterson EA; Shin IJ; Muesse J; Marino K; Steliga MA; Johann DJ
Front Big Data; 2021; 4():725095. PubMed ID: 34647017
[No Abstract] [Full Text] [Related]
14. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework.
Ahmad T; Ahmed N; Al-Ars Z; Hofstee HP
BMC Genomics; 2020 Nov; 21(Suppl 10):683. PubMed ID: 33208101
[TBL] [Abstract][Full Text] [Related]
15. The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible.
van Heusden P; Mashologu Z; Lose T; Warren R; Christoffels A
mSphere; 2022 Feb; 7(1):e0099121. PubMed ID: 35138128
[TBL] [Abstract][Full Text] [Related]
16. Building Containerized Workflows Using the BioDepot-Workflow-Builder.
Hung LH; Hu J; Meiss T; Ingersoll A; Lloyd W; Kristiyanto D; Xiong Y; Sobie E; Yeung KY
Cell Syst; 2019 Nov; 9(5):508-514.e3. PubMed ID: 31521606
[TBL] [Abstract][Full Text] [Related]
17. systemPipeR: NGS workflow and report generation environment.
H Backman TW; Girke T
BMC Bioinformatics; 2016 Sep; 17():388. PubMed ID: 27650223
[TBL] [Abstract][Full Text] [Related]
18. The impact of next-generation sequencing on genomics.
Zhang J; Chiodini R; Badr A; Zhang G
J Genet Genomics; 2011 Mar; 38(3):95-109. PubMed ID: 21477781
[TBL] [Abstract][Full Text] [Related]
19. The impact of Docker containers on the performance of genomic pipelines.
Di Tommaso P; Palumbo E; Chatzou M; Prieto P; Heuer ML; Notredame C
PeerJ; 2015; 3():e1273. PubMed ID: 26421241
[TBL] [Abstract][Full Text] [Related]
20. Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data.
Dunn JG; Weissman JS
BMC Genomics; 2016 Nov; 17(1):958. PubMed ID: 27875984
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
