180 related articles for article (PubMed ID: 28172348)
1. ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data.
Bystry V; Reigl T; Krejci A; Demko M; Hanakova B; Grioni A; Knecht H; Schlitt M; Dreger P; Sellner L; Herrmann D; Pingeon M; Boudjoghra M; Rijntjes J; Pott C; Langerak AW; Groenen PJTA; Davi F; Brüggemann M; Darzentas N;
Bioinformatics; 2017 Feb; 33(3):435-437. PubMed ID: 28172348
[TBL] [Abstract][Full Text] [Related]
2. IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST.
Giudicelli V; Duroux P; Kossida S; Lefranc MP
BMC Immunol; 2017 Jun; 18(1):35. PubMed ID: 28651553
[TBL] [Abstract][Full Text] [Related]
3. IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors.
Aouinti S; Malouche D; Giudicelli V; Kossida S; Lefranc MP
PLoS One; 2015; 10(11):e0142353. PubMed ID: 26540440
[TBL] [Abstract][Full Text] [Related]
4. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
Alamyar E; Duroux P; Lefranc MP; Giudicelli V
Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256
[TBL] [Abstract][Full Text] [Related]
5. IMSEQ--a fast and error aware approach to immunogenetic sequence analysis.
Kuchenbecker L; Nienen M; Hecht J; Neumann AU; Babel N; Reinert K; Robinson PN
Bioinformatics; 2015 Sep; 31(18):2963-71. PubMed ID: 25987567
[TBL] [Abstract][Full Text] [Related]
6. ARResT/Interrogate Immunoprofiling Platform: Concepts, Workflows, and Insights.
Darzentas N
Methods Mol Biol; 2022; 2453():571-584. PubMed ID: 35622342
[TBL] [Abstract][Full Text] [Related]
7. tcR: an R package for T cell receptor repertoire advanced data analysis.
Nazarov VI; Pogorelyy MV; Komech EA; Zvyagin IV; Bolotin DA; Shugay M; Chudakov DM; Lebedev YB; Mamedov IZ
BMC Bioinformatics; 2015 May; 16(1):175. PubMed ID: 26017500
[TBL] [Abstract][Full Text] [Related]
8. ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy.
Bystry V; Agathangelidis A; Bikos V; Sutton LA; Baliakas P; Hadzidimitriou A; Stamatopoulos K; Darzentas N;
Bioinformatics; 2015 Dec; 31(23):3844-6. PubMed ID: 26249808
[TBL] [Abstract][Full Text] [Related]
9. ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data.
Schaller S; Weinberger J; Jimenez-Heredia R; Danzer M; Oberbauer R; Gabriel C; Winkler SM
BMC Bioinformatics; 2015 Aug; 16():252. PubMed ID: 26264428
[TBL] [Abstract][Full Text] [Related]
10. Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS.
Knecht H; Reigl T; Kotrová M; Appelt F; Stewart P; Bystry V; Krejci A; Grioni A; Pal K; Stranska K; Plevova K; Rijntjes J; Songia S; Svatoň M; Froňková E; Bartram J; Scheijen B; Herrmann D; García-Sanz R; Hancock J; Moppett J; van Dongen JJM; Cazzaniga G; Davi F; Groenen PJTA; Hummel M; Macintyre EA; Stamatopoulos K; Trka J; Langerak AW; Gonzalez D; Pott C; Brüggemann M; Darzentas N;
Leukemia; 2019 Sep; 33(9):2254-2265. PubMed ID: 31227779
[TBL] [Abstract][Full Text] [Related]
11. IMGT-Choreography for immunogenetics and immunoinformatics.
Lefranc MP; Clement O; Kaas Q; Duprat E; Chastellan P; Coelho I; Combres K; Ginestoux C; Giudicelli V; Chaume D; Lefranc G
In Silico Biol; 2005; 5(1):45-60. PubMed ID: 15972004
[TBL] [Abstract][Full Text] [Related]
12. LymAnalyzer: a tool for comprehensive analysis of next generation sequencing data of T cell receptors and immunoglobulins.
Yu Y; Ceredig R; Seoighe C
Nucleic Acids Res; 2016 Feb; 44(4):e31. PubMed ID: 26446988
[TBL] [Abstract][Full Text] [Related]
13. High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges.
Langerak AW; Brüggemann M; Davi F; Darzentas N; van Dongen JJM; Gonzalez D; Cazzaniga G; Giudicelli V; Lefranc MP; Giraud M; Macintyre EA; Hummel M; Pott C; Groenen PJTA; Stamatopoulos K;
J Immunol; 2017 May; 198(10):3765-3774. PubMed ID: 28416603
[TBL] [Abstract][Full Text] [Related]
14. IMGT/V-QUEST: IMGT standardized analysis of the immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences.
Giudicelli V; Brochet X; Lefranc MP
Cold Spring Harb Protoc; 2011 Jun; 2011(6):695-715. PubMed ID: 21632778
[No Abstract] [Full Text] [Related]
15. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.
Pal K; Bystry V; Reigl T; Demko M; Krejci A; Touloumenidou T; Stalika E; Tichy B; Ghia P; Stamatopoulos K; Pospisilova S; Malcikova J; Darzentas N
Bioinformatics; 2017 Dec; 33(23):3802-3804. PubMed ID: 29036643
[TBL] [Abstract][Full Text] [Related]
16. IMGT/junctionanalysis: IMGT standardized analysis of the V-J and V-D-J junctions of the rearranged immunoglobulins (IG) and T cell receptors (TR).
Giudicelli V; Lefranc MP
Cold Spring Harb Protoc; 2011 Jun; 2011(6):716-25. PubMed ID: 21632777
[No Abstract] [Full Text] [Related]
17. Error filtering, pair assembly and error correction for next-generation sequencing reads.
Edgar RC; Flyvbjerg H
Bioinformatics; 2015 Nov; 31(21):3476-82. PubMed ID: 26139637
[TBL] [Abstract][Full Text] [Related]
18. TRIP - T cell receptor/immunoglobulin profiler.
Kotouza MT; Gemenetzi K; Galigalidou C; Vlachonikola E; Pechlivanis N; Agathangelidis A; Sandaltzopoulos R; Mitkas PA; Stamatopoulos K; Chatzidimitriou A; Psomopoulos FE;
BMC Bioinformatics; 2020 Sep; 21(1):422. PubMed ID: 32993478
[TBL] [Abstract][Full Text] [Related]
19. IMGT databases, web resources and tools for immunoglobulin and T cell receptor sequence analysis, http://imgt.cines.fr.
Lefranc MP
Leukemia; 2003 Jan; 17(1):260-6. PubMed ID: 12529691
[TBL] [Abstract][Full Text] [Related]
20. From IMGT-ONTOLOGY IDENTIFICATION axiom to IMGT standardized keywords: for immunoglobulins (IG), T cell receptors (TR), and conventional genes.
Lefranc MP
Cold Spring Harb Protoc; 2011 Jun; 2011(6):604-13. PubMed ID: 21632792
[No Abstract] [Full Text] [Related]
[Next] [New Search]
