These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 28177305)

  • 21. GEMMI and Servalcat restrain REFMAC5.
    Yamashita K; Wojdyr M; Long F; Nicholls RA; Murshudov GN
    Acta Crystallogr D Struct Biol; 2023 May; 79(Pt 5):368-373. PubMed ID: 37158197
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution.
    Headd JJ; Echols N; Afonine PV; Grosse-Kunstleve RW; Chen VB; Moriarty NW; Richardson DC; Richardson JS; Adams PD
    Acta Crystallogr D Biol Crystallogr; 2012 Apr; 68(Pt 4):381-90. PubMed ID: 22505258
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Recent developments for crystallographic refinement of macromolecules.
    Brünger AT
    Methods Mol Biol; 1996; 56():245-66. PubMed ID: 8781249
    [No Abstract]   [Full Text] [Related]  

  • 24. Exploring ligand dynamics in protein crystal structures with ensemble refinement.
    Caldararu O; Ekberg V; Logan DT; Oksanen E; Ryde U
    Acta Crystallogr D Struct Biol; 2021 Aug; 77(Pt 8):1099-1115. PubMed ID: 34342282
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Ligand fitting with CCP4.
    Nicholls RA
    Acta Crystallogr D Struct Biol; 2017 Feb; 73(Pt 2):158-170. PubMed ID: 28177312
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Models of protein-ligand crystal structures: trust, but verify.
    Deller MC; Rupp B
    J Comput Aided Mol Des; 2015 Sep; 29(9):817-36. PubMed ID: 25665575
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Conformation-dependent restraints for polynucleotides: the sugar moiety.
    Kowiel M; Brzezinski D; Gilski M; Jaskolski M
    Nucleic Acids Res; 2020 Jan; 48(2):962-973. PubMed ID: 31799624
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.
    Adams PD; Aertgeerts K; Bauer C; Bell JA; Berman HM; Bhat TN; Blaney JM; Bolton E; Bricogne G; Brown D; Burley SK; Case DA; Clark KL; Darden T; Emsley P; Feher VA; Feng Z; Groom CR; Harris SF; Hendle J; Holder T; Joachimiak A; Kleywegt GJ; Krojer T; Marcotrigiano J; Mark AE; Markley JL; Miller M; Minor W; Montelione GT; Murshudov G; Nakagawa A; Nakamura H; Nicholls A; Nicklaus M; Nolte RT; Padyana AK; Peishoff CE; Pieniazek S; Read RJ; Shao C; Sheriff S; Smart O; Soisson S; Spurlino J; Stouch T; Svobodova R; Tempel W; Terwilliger TC; Tronrud D; Velankar S; Ward SC; Warren GL; Westbrook JD; Williams P; Yang H; Young J
    Structure; 2016 Apr; 24(4):502-508. PubMed ID: 27050687
    [TBL] [Abstract][Full Text] [Related]  

  • 29. REFMAC5 for the refinement of macromolecular crystal structures.
    Murshudov GN; Skubák P; Lebedev AA; Pannu NS; Steiner RA; Nicholls RA; Winn MD; Long F; Vagin AA
    Acta Crystallogr D Biol Crystallogr; 2011 Apr; 67(Pt 4):355-67. PubMed ID: 21460454
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER.
    Smart OS; Womack TO; Flensburg C; Keller P; Paciorek W; Sharff A; Vonrhein C; Bricogne G
    Acta Crystallogr D Biol Crystallogr; 2012 Apr; 68(Pt 4):368-80. PubMed ID: 22505257
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Protein structure determination using a Riemannian approach.
    Wei X; Li ZC; Li SJ; Peng XB; Zhao Q
    FEBS Lett; 2020 Mar; 594(6):1036-1051. PubMed ID: 31769509
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Rigid body refinement of protein complexes with long-range distance restraints from pulsed dipolar ESR.
    Bhatnagar J; Freed JH; Crane BR
    Methods Enzymol; 2007; 423():117-33. PubMed ID: 17609128
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).
    Adams PD; Afonine PV; Baskaran K; Berman HM; Berrisford J; Bricogne G; Brown DG; Burley SK; Chen M; Feng Z; Flensburg C; Gutmanas A; Hoch JC; Ikegawa Y; Kengaku Y; Krissinel E; Kurisu G; Liang Y; Liebschner D; Mak L; Markley JL; Moriarty NW; Murshudov GN; Noble M; Peisach E; Persikova I; Poon BK; Sobolev OV; Ulrich EL; Velankar S; Vonrhein C; Westbrook J; Wojdyr M; Yokochi M; Young JY
    Acta Crystallogr D Struct Biol; 2019 Apr; 75(Pt 4):451-454. PubMed ID: 30988261
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Introduction to macromolecular refinement.
    Tronrud DE
    Acta Crystallogr D Biol Crystallogr; 2004 Dec; 60(Pt 12 Pt 1):2156-68. PubMed ID: 15572769
    [TBL] [Abstract][Full Text] [Related]  

  • 35. A Practical Approach to Protein Crystallography.
    Ilari A; Savino C
    Methods Mol Biol; 2017; 1525():47-78. PubMed ID: 27896717
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Estimation of the protein-ligand interaction energy for model building and validation.
    Beshnova DA; Pereira J; Lamzin VS
    Acta Crystallogr D Struct Biol; 2017 Mar; 73(Pt 3):195-202. PubMed ID: 28291754
    [TBL] [Abstract][Full Text] [Related]  

  • 37. X-ray crystallography in drug discovery.
    Carvalho AL; Trincão J; Romão MJ
    Methods Mol Biol; 2009; 572():31-56. PubMed ID: 20694684
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Validation of ligands in macromolecular structures determined by X-ray crystallography.
    Smart OS; Horský V; Gore S; Svobodová Vařeková R; Bendová V; Kleywegt GJ; Velankar S
    Acta Crystallogr D Struct Biol; 2018 Mar; 74(Pt 3):228-236. PubMed ID: 29533230
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Fragmentation-tree density representation for crystallographic modelling of bound ligands.
    Langer GG; Evrard GX; Carolan CG; Lamzin VS
    J Mol Biol; 2012 Jun; 419(3-4):211-22. PubMed ID: 22446381
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Automated ligand placement and refinement with a combined force field and shape potential.
    Wlodek S; Skillman AG; Nicholls A
    Acta Crystallogr D Biol Crystallogr; 2006 Jul; 62(Pt 7):741-9. PubMed ID: 16790930
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.