These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 28180325)

  • 1. ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores.
    Orellana LH; Rodriguez-R LM; Konstantinidis KT
    Nucleic Acids Res; 2017 Feb; 45(3):e14. PubMed ID: 28180325
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.
    Orellana LH; Rodriguez-R LM; Higgins S; Chee-Sanford JC; Sanford RA; Ritalahti KM; Löffler FE; Konstantinidis KT
    mBio; 2014 Jun; 5(3):e01193-14. PubMed ID: 24895307
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying β-Lactamase Genes.
    Zhang SY; Suttner B; Rodriguez-R LM; Orellana LH; Conrad RE; Liu F; Rowell JL; Webb HE; Williams-Newkirk AJ; Huang A; Konstantinidis KT
    mSystems; 2022 Jun; 7(3):e0128121. PubMed ID: 35638728
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparative analysis of functional metagenomic annotation and the mappability of short reads.
    Carr R; Borenstein E
    PLoS One; 2014; 9(8):e105776. PubMed ID: 25148512
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MetaDomain: a profile HMM-based protein domain classification tool for short sequences.
    Zhang Y; Sun Y
    Pac Symp Biocomput; 2012; ():271-82. PubMed ID: 22174282
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Functional association prediction by community profiling.
    Jiao D; Han W; Ye Y
    Methods; 2017 Oct; 129():8-17. PubMed ID: 28454776
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Methane and nitrous oxide cycling microbial communities in soils above septic leach fields: Abundances with depth and correlations with net surface emissions.
    Fernández-Baca CP; Truhlar AM; Omar AH; Rahm BG; Walter MT; Richardson RE
    Sci Total Environ; 2018 Nov; 640-641():429-441. PubMed ID: 29860012
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Soil biochar amendment shapes the composition of N2O-reducing microbial communities.
    Harter J; Weigold P; El-Hadidi M; Huson DH; Kappler A; Behrens S
    Sci Total Environ; 2016 Aug; 562():379-390. PubMed ID: 27100017
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Nitrous oxide reduction genetic potential from the microbial community of an intermittently aerated partial nitritation SBR treating mature landfill leachate.
    Gabarró J; Hernández-Del Amo E; Gich F; Ruscalleda M; Balaguer MD; Colprim J
    Water Res; 2013 Dec; 47(19):7066-77. PubMed ID: 24183561
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metagenomics: Probing pollutant fate in natural and engineered ecosystems.
    Bouhajja E; Agathos SN; George IF
    Biotechnol Adv; 2016 Dec; 34(8):1413-1426. PubMed ID: 27825829
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.
    Henry S; Bru D; Stres B; Hallet S; Philippot L
    Appl Environ Microbiol; 2006 Aug; 72(8):5181-9. PubMed ID: 16885263
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metagenomics: read length matters.
    Wommack KE; Bhavsar J; Ravel J
    Appl Environ Microbiol; 2008 Mar; 74(5):1453-63. PubMed ID: 18192407
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Mavromatis K; Ivanova N; Barry K; Shapiro H; Goltsman E; McHardy AC; Rigoutsos I; Salamov A; Korzeniewski F; Land M; Lapidus A; Grigoriev I; Richardson P; Hugenholtz P; Kyrpides NC
    Nat Methods; 2007 Jun; 4(6):495-500. PubMed ID: 17468765
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Artificial functional difference between microbial communities caused by length difference of sequencing reads.
    Zhang Q; Doak TG; Ye Y
    Pac Symp Biocomput; 2012; ():259-70. PubMed ID: 22174281
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia.
    Nelson WC; Maezato Y; Wu YW; Romine MF; Lindemann SR
    Appl Environ Microbiol; 2016 Jan; 82(1):255-67. PubMed ID: 26497460
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.
    Silva GGZ; Lopes FAC; Edwards RA
    Methods Mol Biol; 2017; 1611():35-44. PubMed ID: 28451970
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Functional Responses of Salt Marsh Microbial Communities to Long-Term Nutrient Enrichment.
    Graves CJ; Makrides EJ; Schmidt VT; Giblin AE; Cardon ZG; Rand DM
    Appl Environ Microbiol; 2016 May; 82(9):2862-2871. PubMed ID: 26944843
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Phylogenetic and functional potential links pH and N
    Samad MS; Biswas A; Bakken LR; Clough TJ; de Klein CA; Richards KG; Lanigan GJ; Morales SE
    Sci Rep; 2016 Oct; 6():35990. PubMed ID: 27782174
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient.
    Fortunato CS; Crump BC
    PLoS One; 2015; 10(11):e0140578. PubMed ID: 26536246
    [TBL] [Abstract][Full Text] [Related]  

  • 20. imGLAD: accurate detection and quantification of target organisms in metagenomes.
    Castro JC; Rodriguez-R LM; Harvey WT; Weigand MR; Hatt JK; Carter MQ; Konstantinidis KT
    PeerJ; 2018; 6():e5882. PubMed ID: 30405973
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.