139 related articles for article (PubMed ID: 28186259)
1. MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets.
Fort A; Panousis NI; Garieri M; Antonarakis SE; Lappalainen T; Dermitzakis ET; Delaneau O
Bioinformatics; 2017 Jun; 33(12):1895-1897. PubMed ID: 28186259
[TBL] [Abstract][Full Text] [Related]
2. FlashPCA2: principal component analysis of Biobank-scale genotype datasets.
Abraham G; Qiu Y; Inouye M
Bioinformatics; 2017 Sep; 33(17):2776-2778. PubMed ID: 28475694
[TBL] [Abstract][Full Text] [Related]
3. Fast and efficient QTL mapper for thousands of molecular phenotypes.
Ongen H; Buil A; Brown AA; Dermitzakis ET; Delaneau O
Bioinformatics; 2016 May; 32(10):1479-85. PubMed ID: 26708335
[TBL] [Abstract][Full Text] [Related]
4. cyvcf2: fast, flexible variant analysis with Python.
Pedersen BS; Quinlan AR
Bioinformatics; 2017 Jun; 33(12):1867-1869. PubMed ID: 28165109
[TBL] [Abstract][Full Text] [Related]
5. Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.
Willet CE; Haase B; Charleston MA; Wade CM
Bioinformatics; 2015 Feb; 31(4):599-601. PubMed ID: 25336502
[TBL] [Abstract][Full Text] [Related]
6. UpSetR: an R package for the visualization of intersecting sets and their properties.
Conway JR; Lex A; Gehlenborg N
Bioinformatics; 2017 Sep; 33(18):2938-2940. PubMed ID: 28645171
[TBL] [Abstract][Full Text] [Related]
7. GTC: how to maintain huge genotype collections in a compressed form.
Danek A; Deorowicz S
Bioinformatics; 2018 Jun; 34(11):1834-1840. PubMed ID: 29351600
[TBL] [Abstract][Full Text] [Related]
8. Constructing linkage maps in the genomics era with MapDisto 2.0.
Heffelfinger C; Fragoso CA; Lorieux M
Bioinformatics; 2017 Jul; 33(14):2224-2225. PubMed ID: 28369214
[TBL] [Abstract][Full Text] [Related]
9. VariantTools: an extensible framework for developing and testing variant callers.
Lawrence M; Gentleman R
Bioinformatics; 2017 Oct; 33(20):3311-3313. PubMed ID: 29028267
[TBL] [Abstract][Full Text] [Related]
10. Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions.
Wu SH; Schwartz RS; Winter DJ; Conrad DF; Cartwright RA
Bioinformatics; 2017 Aug; 33(15):2322-2329. PubMed ID: 28334373
[TBL] [Abstract][Full Text] [Related]
11. VIPER: a web application for rapid expert review of variant calls.
Wöste M; Dugas M
Bioinformatics; 2018 Jun; 34(11):1928-1929. PubMed ID: 29346510
[TBL] [Abstract][Full Text] [Related]
12. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.
Pal K; Bystry V; Reigl T; Demko M; Krejci A; Touloumenidou T; Stalika E; Tichy B; Ghia P; Stamatopoulos K; Pospisilova S; Malcikova J; Darzentas N
Bioinformatics; 2017 Dec; 33(23):3802-3804. PubMed ID: 29036643
[TBL] [Abstract][Full Text] [Related]
13. Correcting for Sample Contamination in Genotype Calling of DNA Sequence Data.
Flickinger M; Jun G; Abecasis GR; Boehnke M; Kang HM
Am J Hum Genet; 2015 Aug; 97(2):284-90. PubMed ID: 26235984
[TBL] [Abstract][Full Text] [Related]
14. SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data.
Blischak PD; Kubatko LS; Wolfe AD
Bioinformatics; 2018 Feb; 34(3):407-415. PubMed ID: 29028881
[TBL] [Abstract][Full Text] [Related]
15. BAM-matcher: a tool for rapid NGS sample matching.
Wang PP; Parker WT; Branford S; Schreiber AW
Bioinformatics; 2016 Sep; 32(17):2699-701. PubMed ID: 27153667
[TBL] [Abstract][Full Text] [Related]
16. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
17. veqtl-mapper: variance association mapping for molecular phenotypes.
Brown AA
Bioinformatics; 2017 Sep; 33(17):2772-2773. PubMed ID: 28449110
[TBL] [Abstract][Full Text] [Related]
18. PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.
Mallet L; Bitard-Feildel T; Cerutti F; Chiapello H
Bioinformatics; 2017 Oct; 33(20):3283-3285. PubMed ID: 28637232
[TBL] [Abstract][Full Text] [Related]
19. gargammel: a sequence simulator for ancient DNA.
Renaud G; Hanghøj K; Willerslev E; Orlando L
Bioinformatics; 2017 Feb; 33(4):577-579. PubMed ID: 27794556
[TBL] [Abstract][Full Text] [Related]
20. GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification.
Szpiech ZA; Blant A; Pemberton TJ
Bioinformatics; 2017 Jul; 33(13):2059-2062. PubMed ID: 28205676
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]