These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. AtCAST3.0 update: a web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles. Kakei Y; Shimada Y Plant Cell Physiol; 2015 Jan; 56(1):e7. PubMed ID: 25505006 [TBL] [Abstract][Full Text] [Related]
6. How to analyze gene expression using RNA-sequencing data. Ramsköld D; Kavak E; Sandberg R Methods Mol Biol; 2012; 802():259-74. PubMed ID: 22130886 [TBL] [Abstract][Full Text] [Related]
7. RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation. Gluck C; Min S; Oyelakin A; Smalley K; Sinha S; Romano RA BMC Genomics; 2016 Nov; 17(1):923. PubMed ID: 27852218 [TBL] [Abstract][Full Text] [Related]
8. GObar: a gene ontology based analysis and visualization tool for gene sets. Lee JS; Katari G; Sachidanandam R BMC Bioinformatics; 2005 Jul; 6():189. PubMed ID: 16042800 [TBL] [Abstract][Full Text] [Related]
9. AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species. Robinson AJ; Tamiru M; Salby R; Bolitho C; Williams A; Huggard S; Fisch E; Unsworth K; Whelan J; Lewsey MG BMC Plant Biol; 2018 Sep; 18(1):200. PubMed ID: 30231853 [TBL] [Abstract][Full Text] [Related]
10. GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles. Klein MI; Stern DF; Zhao H BMC Bioinformatics; 2017 Jun; 18(1):317. PubMed ID: 28651562 [TBL] [Abstract][Full Text] [Related]
11. Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes. Ockendon NF; O'Connell LA; Bush SJ; Monzón-Sandoval J; Barnes H; Székely T; Hofmann HA; Dorus S; Urrutia AO Mol Ecol Resour; 2016 Mar; 16(2):446-58. PubMed ID: 26358618 [TBL] [Abstract][Full Text] [Related]
12. s ·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data. Klemm P; Frommolt P; Kornfeld JW BMC Genomics; 2019 Jan; 20(1):85. PubMed ID: 30678634 [TBL] [Abstract][Full Text] [Related]
13. FunPat: function-based pattern analysis on RNA-seq time series data. Sanavia T; Finotello F; Di Camillo B BMC Genomics; 2015; 16(Suppl 6):S2. PubMed ID: 26046293 [TBL] [Abstract][Full Text] [Related]
14. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles. Budak G; Srivastava R; Janga SC RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542 [TBL] [Abstract][Full Text] [Related]
15. Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate. Liu X; Shi X; Chen C; Zhang L BMC Bioinformatics; 2015 Oct; 16():332. PubMed ID: 26475308 [TBL] [Abstract][Full Text] [Related]
16. RNASeqExpressionBrowser--a web interface to browse and visualize high-throughput expression data. Nussbaumer T; Kugler KG; Bader KC; Sharma S; Seidel M; Mayer KF Bioinformatics; 2014 Sep; 30(17):2519-20. PubMed ID: 24833805 [TBL] [Abstract][Full Text] [Related]
17. RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data. Kim MS; Hur B; Kim S BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):5. PubMed ID: 26817607 [TBL] [Abstract][Full Text] [Related]
18. FlyRNAi: the Drosophila RNAi screening center database. Flockhart I; Booker M; Kiger A; Boutros M; Armknecht S; Ramadan N; Richardson K; Xu A; Perrimon N; Mathey-Prevot B Nucleic Acids Res; 2006 Jan; 34(Database issue):D489-94. PubMed ID: 16381918 [TBL] [Abstract][Full Text] [Related]
19. RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages. Song W; Jiang K; Zhang F; Lin Y; Ma L BMC Genomics; 2016 Aug; 17():564. PubMed ID: 27502271 [TBL] [Abstract][Full Text] [Related]
20. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms. Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]