These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 28198678)

  • 1. GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes.
    Yuan L; Yu Y; Zhu Y; Li Y; Li C; Li R; Ma Q; Siu GK; Yu J; Jiang T; Xiao J; Kang Y
    BMC Genomics; 2017 Jan; 18(Suppl 1):952. PubMed ID: 28198678
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks.
    Kang Y; Gu C; Yuan L; Wang Y; Zhu Y; Li X; Luo Q; Xiao J; Jiang D; Qian M; Ahmed Khan A; Chen F; Zhang Z; Yu J
    mBio; 2014 Nov; 5(6):e01867. PubMed ID: 25425232
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
    Thakur S; Guttman DS
    BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multi-CAR: a tool of contig scaffolding using multiple references.
    Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
    Lu CL; Chen KT; Huang SY; Chiu HT
    BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Unexpected effects of different genetic backgrounds on identification of genomic rearrangements via whole-genome next generation sequencing.
    Chen Z; Gowan K; Leach SM; Viboolsittiseri SS; Mishra AK; Kadoishi T; Diener K; Gao B; Jones K; Wang JH
    BMC Genomics; 2016 Oct; 17(1):823. PubMed ID: 27769169
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.
    Kuhl H; Li L; Wuertz S; Stöck M; Liang XF; Klopp C
    Gigascience; 2020 May; 9(5):. PubMed ID: 32449778
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SIS: a program to generate draft genome sequence scaffolds for prokaryotes.
    Dias Z; Dias U; Setubal JC
    BMC Bioinformatics; 2012 May; 13():96. PubMed ID: 22583530
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

  • 10. An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.
    Liu B; Zhang H; Zhou C; Li G; Fennell A; Wang G; Kang Y; Liu Q; Ma Q
    BMC Genomics; 2016 Aug; 17():578. PubMed ID: 27507169
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GFinisher: a new strategy to refine and finish bacterial genome assemblies.
    Guizelini D; Raittz RT; Cruz LM; Souza EM; Steffens MB; Pedrosa FO
    Sci Rep; 2016 Oct; 6():34963. PubMed ID: 27721396
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Positional bias in variant calls against draft reference assemblies.
    Briskine RV; Shimizu KK
    BMC Genomics; 2017 Mar; 18(1):263. PubMed ID: 28351369
    [TBL] [Abstract][Full Text] [Related]  

  • 13. LRScaf: improving draft genomes using long noisy reads.
    Qin M; Wu S; Li A; Zhao F; Feng H; Ding L; Ruan J
    BMC Genomics; 2019 Dec; 20(1):955. PubMed ID: 31818249
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Assembly complexity of prokaryotic genomes using short reads.
    Kingsford C; Schatz MC; Pop M
    BMC Bioinformatics; 2010 Jan; 11():21. PubMed ID: 20064276
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reference-assisted chromosome assembly.
    Kim J; Larkin DM; Cai Q; Asan ; Zhang Y; Ge RL; Auvil L; Capitanu B; Zhang G; Lewin HA; Ma J
    Proc Natl Acad Sci U S A; 2013 Jan; 110(5):1785-90. PubMed ID: 23307812
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods.
    Martin G; Baurens FC; Droc G; Rouard M; Cenci A; Kilian A; Hastie A; Doležel J; Aury JM; Alberti A; Carreel F; D'Hont A
    BMC Genomics; 2016 Mar; 17():243. PubMed ID: 26984673
    [TBL] [Abstract][Full Text] [Related]  

  • 17. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
    Lin HH; Liao YC
    PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CAMSA: a tool for comparative analysis and merging of scaffold assemblies.
    Aganezov SS; Alekseyev MA
    BMC Bioinformatics; 2017 Dec; 18(Suppl 15):496. PubMed ID: 29244014
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data.
    Soorni A; Haak D; Zaitlin D; Bombarely A
    BMC Genomics; 2017 Jan; 18(1):49. PubMed ID: 28061749
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.