These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Drummond AJ; Suchard MA; Xie D; Rambaut A Mol Biol Evol; 2012 Aug; 29(8):1969-73. PubMed ID: 22367748 [TBL] [Abstract][Full Text] [Related]
4. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Nylander JA; Wilgenbusch JC; Warren DL; Swofford DL Bioinformatics; 2008 Feb; 24(4):581-3. PubMed ID: 17766271 [TBL] [Abstract][Full Text] [Related]
5. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE. Baele G; Ayres DL; Rambaut A; Suchard MA; Lemey P Methods Mol Biol; 2019; 1910():691-722. PubMed ID: 31278682 [TBL] [Abstract][Full Text] [Related]
6. Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals. Wu SH; Rodrigo AG BMC Bioinformatics; 2015 Nov; 16():357. PubMed ID: 26536860 [TBL] [Abstract][Full Text] [Related]
7. Many-core algorithms for high-dimensional gradients on phylogenetic trees. Gangavarapu K; Ji X; Baele G; Fourment M; Lemey P; Matsen FA; Suchard MA Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38243701 [TBL] [Abstract][Full Text] [Related]
8. Real-Time and Remote MCMC Trace Inspection with Beastiary. Wirth W; Duchene S Mol Biol Evol; 2022 May; 39(5):. PubMed ID: 35552742 [TBL] [Abstract][Full Text] [Related]
10. Scalable Bayesian phylogenetics. Fisher AA; Hassler GW; Ji X; Baele G; Suchard MA; Lemey P Philos Trans R Soc Lond B Biol Sci; 2022 Oct; 377(1861):20210242. PubMed ID: 35989603 [TBL] [Abstract][Full Text] [Related]
11. RWTY (R We There Yet): An R Package for Examining Convergence of Bayesian Phylogenetic Analyses. Warren DL; Geneva AJ; Lanfear R Mol Biol Evol; 2017 Apr; 34(4):1016-1020. PubMed ID: 28087773 [TBL] [Abstract][Full Text] [Related]
12. A biologist's guide to Bayesian phylogenetic analysis. Nascimento FF; Reis MD; Yang Z Nat Ecol Evol; 2017 Oct; 1(10):1446-1454. PubMed ID: 28983516 [TBL] [Abstract][Full Text] [Related]
13. Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model. Douglas J; Zhang R; Bouckaert R PLoS Comput Biol; 2021 Feb; 17(2):e1008322. PubMed ID: 33529184 [TBL] [Abstract][Full Text] [Related]
14. An Annealed Sequential Monte Carlo Method for Bayesian Phylogenetics. Wang L; Wang S; Bouchard-Côté A Syst Biol; 2020 Jan; 69(1):155-183. PubMed ID: 31173141 [TBL] [Abstract][Full Text] [Related]
16. Bayesian random local clocks, or one rate to rule them all. Drummond AJ; Suchard MA BMC Biol; 2010 Aug; 8():114. PubMed ID: 20807414 [TBL] [Abstract][Full Text] [Related]