These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

215 related articles for article (PubMed ID: 28202709)

  • 1. Understanding in-line probing experiments by modeling cleavage of nonreactive RNA nucleotides.
    Mlýnský V; Bussi G
    RNA; 2017 May; 23(5):712-720. PubMed ID: 28202709
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins.
    Thapar R; Denmon AP; Nikonowicz EP
    Wiley Interdiscip Rev RNA; 2014; 5(1):49-67. PubMed ID: 24124096
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RNase-stable RNA: conformational parameters of the nucleic acid backbone for binding to RNase T1.
    Greiner-Stöffele T; Förster HH; Hofmann HJ; Hahn U
    Biol Chem; 2001 Jul; 382(7):1007-17. PubMed ID: 11530931
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterization of the reactivity determinants of a novel hairpin substrate of yeast RNase III.
    Ghazal G; Elela SA
    J Mol Biol; 2006 Oct; 363(2):332-44. PubMed ID: 16962133
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mapping the Universe of RNA Tetraloop Folds.
    Bottaro S; Lindorff-Larsen K
    Biophys J; 2017 Jul; 113(2):257-267. PubMed ID: 28673616
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The effect of secondary structure on cleavage of the phosphodiester bonds of RNA.
    Mikkola S; Kaukinen U; Lönnberg H
    Cell Biochem Biophys; 2001; 34(1):95-119. PubMed ID: 11394443
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An RNA folding motif: GNRA tetraloop-receptor interactions.
    Fiore JL; Nesbitt DJ
    Q Rev Biophys; 2013 Aug; 46(3):223-64. PubMed ID: 23915736
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Insights into Stability and Folding of GNRA and UNCG Tetraloops Revealed by Microsecond Molecular Dynamics and Well-Tempered Metadynamics.
    Haldar S; Kührová P; Banáš P; Spiwok V; Šponer J; Hobza P; Otyepka M
    J Chem Theory Comput; 2015 Aug; 11(8):3866-77. PubMed ID: 26574468
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification and Characterization of New RNA Tetraloop Sequence Families.
    Richardson KE; Adams MS; Kirkpatrick CC; Gohara DW; Znosko BM
    Biochemistry; 2019 Dec; 58(48):4809-4820. PubMed ID: 31714066
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction.
    Abramovitz DL; Pyle AM
    J Mol Biol; 1997 Feb; 266(3):493-506. PubMed ID: 9067606
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effects of base substitutions in an RNA hairpin from molecular dynamics and free energy simulations.
    Sarzynska J; Nilsson L; Kulinski T
    Biophys J; 2003 Dec; 85(6):3445-59. PubMed ID: 14645041
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Direct identification of base-paired RNA nucleotides by correlated chemical probing.
    Krokhotin A; Mustoe AM; Weeks KM; Dokholyan NV
    RNA; 2017 Jan; 23(1):6-13. PubMed ID: 27803152
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis.
    Mustoe AM; Weidmann CA; Weeks KM
    Acc Chem Res; 2023 Apr; 56(7):763-775. PubMed ID: 36917683
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of the RNA backbone: structural analysis of riboswitches by in-line probing and selective 2'-hydroxyl acylation and primer extension.
    Wakeman CA; Winkler WC
    Methods Mol Biol; 2009; 540():173-91. PubMed ID: 19381560
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations of the denaturation and refolding of an RNA tetraloop.
    Li W; Ma B; Shapiro B
    J Biomol Struct Dyn; 2001 Dec; 19(3):381-96. PubMed ID: 11790138
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conformational transitions in RNA single uridine and adenosine bulge structures: a molecular dynamics free energy simulation study.
    Barthel A; Zacharias M
    Biophys J; 2006 Apr; 90(7):2450-62. PubMed ID: 16399833
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular requirements for duplex recognition and cleavage by eukaryotic RNase III: discovery of an RNA-dependent DNA cleavage activity of yeast Rnt1p.
    Lamontagne B; Hannoush RN; Damha MJ; Abou Elela S
    J Mol Biol; 2004 Apr; 338(2):401-18. PubMed ID: 15066440
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of an aminoacridine derivative that binds to RNA tetraloops.
    Yan Z; Sikri S; Beveridge DL; Baranger AM
    J Med Chem; 2007 Aug; 50(17):4096-104. PubMed ID: 17665894
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.
    Pley HW; Flaherty KM; McKay DB
    Nature; 1994 Nov; 372(6501):111-3. PubMed ID: 7526219
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study.
    Frezza E; Courban A; Allouche D; Sargueil B; Pasquali S
    Methods; 2019 Jun; 162-163():108-127. PubMed ID: 31145972
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.