177 related articles for article (PubMed ID: 28204784)
1. A Poissonian Model of Indel Rate Variation for Phylogenetic Tree Inference.
Zhai Y; Alexandre BC
Syst Biol; 2017 Sep; 66(5):698-714. PubMed ID: 28204784
[TBL] [Abstract][Full Text] [Related]
2. A Simulation-Based Approach to Statistical Alignment.
Levy Karin E; Ashkenazy H; Hein J; Pupko T
Syst Biol; 2019 Mar; 68(2):252-266. PubMed ID: 30239957
[TBL] [Abstract][Full Text] [Related]
3. Progressive multiple sequence alignment with indel evolution.
Maiolo M; Zhang X; Gil M; Anisimova M
BMC Bioinformatics; 2018 Sep; 19(1):331. PubMed ID: 30241460
[TBL] [Abstract][Full Text] [Related]
4. Evolutionary inference via the Poisson Indel Process.
Bouchard-Côté A; Jordan MI
Proc Natl Acad Sci U S A; 2013 Jan; 110(4):1160-6. PubMed ID: 23275296
[TBL] [Abstract][Full Text] [Related]
5. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
6. General continuous-time Markov model of sequence evolution via insertions/deletions: are alignment probabilities factorable?
Ezawa K
BMC Bioinformatics; 2016 Aug; 17():304. PubMed ID: 27638547
[TBL] [Abstract][Full Text] [Related]
7. Indel reliability in indel-based phylogenetic inference.
Ashkenazy H; Cohen O; Pupko T; Huchon D
Genome Biol Evol; 2014 Nov; 6(12):3199-209. PubMed ID: 25409663
[TBL] [Abstract][Full Text] [Related]
8. Joint Bayesian estimation of alignment and phylogeny.
Redelings BD; Suchard MA
Syst Biol; 2005 Jun; 54(3):401-18. PubMed ID: 16012107
[TBL] [Abstract][Full Text] [Related]
9. ARPIP: Ancestral Sequence Reconstruction with Insertions and Deletions under the Poisson Indel Process.
Jowkar G; Pečerska J; Maiolo M; Gil M; Anisimova M
Syst Biol; 2023 Jun; 72(2):307-318. PubMed ID: 35866991
[TBL] [Abstract][Full Text] [Related]
10. Incorporating indels as phylogenetic characters: impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora).
Luan PT; Ryder OA; Davis H; Zhang YP; Yu L
Mol Phylogenet Evol; 2013 Mar; 66(3):748-56. PubMed ID: 23147269
[TBL] [Abstract][Full Text] [Related]
11. Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling.
Fan WT; Roch S
Bull Math Biol; 2020 Jan; 82(2):21. PubMed ID: 31970502
[TBL] [Abstract][Full Text] [Related]
12. Using evolutionary Expectation Maximization to estimate indel rates.
Holmes I
Bioinformatics; 2005 May; 21(10):2294-300. PubMed ID: 15731213
[TBL] [Abstract][Full Text] [Related]
13. ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process.
Maiolo M; Gatti L; Frei D; Leidi T; Gil M; Anisimova M
BMC Bioinformatics; 2021 Oct; 22(1):518. PubMed ID: 34689750
[TBL] [Abstract][Full Text] [Related]
14. Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking.
Bogusz M; Whelan S
Syst Biol; 2017 Mar; 66(2):218-231. PubMed ID: 27633353
[TBL] [Abstract][Full Text] [Related]
15. BayesCAT: Bayesian co-estimation of alignment and tree.
Shim H; Larget B
Biometrics; 2018 Mar; 74(1):270-279. PubMed ID: 28099991
[TBL] [Abstract][Full Text] [Related]
16. Phylogenetic inference under varying proportions of indel-induced alignment gaps.
Dwivedi B; Gadagkar SR
BMC Evol Biol; 2009 Aug; 9():211. PubMed ID: 19698168
[TBL] [Abstract][Full Text] [Related]
17. Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi.
Nagy LG; Kocsubé S; Csanádi Z; Kovács GM; Petkovits T; Vágvölgyi C; Papp T
PLoS One; 2012; 7(11):e49794. PubMed ID: 23185439
[TBL] [Abstract][Full Text] [Related]
18. Accurate reconstruction of insertion-deletion histories by statistical phylogenetics.
Westesson O; Lunter G; Paten B; Holmes I
PLoS One; 2012; 7(4):e34572. PubMed ID: 22536326
[TBL] [Abstract][Full Text] [Related]
19. Probabilistic phylogenetic inference with insertions and deletions.
Rivas E; Eddy SR
PLoS Comput Biol; 2008 Sep; 4(9):e1000172. PubMed ID: 18787703
[TBL] [Abstract][Full Text] [Related]
20. INDELible: a flexible simulator of biological sequence evolution.
Fletcher W; Yang Z
Mol Biol Evol; 2009 Aug; 26(8):1879-88. PubMed ID: 19423664
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]