These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Subknots in ideal knots, random knots, and knotted proteins. Rawdon EJ; Millett KC; Stasiak A Sci Rep; 2015 Mar; 5():8928. PubMed ID: 25753957 [TBL] [Abstract][Full Text] [Related]
4. Statistics of knots, geometry of conformations, and evolution of proteins. Lua RC; Grosberg AY PLoS Comput Biol; 2006 May; 2(5):e45. PubMed ID: 16710448 [TBL] [Abstract][Full Text] [Related]
5. KnotProt: a database of proteins with knots and slipknots. Jamroz M; Niemyska W; Rawdon EJ; Stasiak A; Millett KC; Sułkowski P; Sulkowska JI Nucleic Acids Res; 2015 Jan; 43(Database issue):D306-14. PubMed ID: 25361973 [TBL] [Abstract][Full Text] [Related]
6. Vortex knots in tangled quantum eigenfunctions. Taylor AJ; Dennis MR Nat Commun; 2016 Jul; 7():12346. PubMed ID: 27468801 [TBL] [Abstract][Full Text] [Related]
7. Tying up the Loose Ends: A Mathematically Knotted Protein. Hsu SD; Lee YC; Mikula KM; Backlund SM; Tascón I; Goldman A; Iwaï H Front Chem; 2021; 9():663241. PubMed ID: 34109153 [TBL] [Abstract][Full Text] [Related]
8. Spontaneous knotting of an agitated string. Raymer DM; Smith DE Proc Natl Acad Sci U S A; 2007 Oct; 104(42):16432-7. PubMed ID: 17911269 [TBL] [Abstract][Full Text] [Related]
9. Knotting probability of self-avoiding polygons under a topological constraint. Uehara E; Deguchi T J Chem Phys; 2017 Sep; 147(9):094901. PubMed ID: 28886644 [TBL] [Abstract][Full Text] [Related]
10. Protein knots and fold complexity: some new twists. Taylor WR Comput Biol Chem; 2007 Jun; 31(3):151-62. PubMed ID: 17500039 [TBL] [Abstract][Full Text] [Related]
11. Origin of metastable knots in single flexible chains. Dai L; Renner CB; Doyle PS Phys Rev Lett; 2015 Jan; 114(3):037801. PubMed ID: 25659023 [TBL] [Abstract][Full Text] [Related]
12. Studies of global and local entanglements of individual protein chains using the concept of knotoids. Goundaroulis D; Dorier J; Benedetti F; Stasiak A Sci Rep; 2017 Jul; 7(1):6309. PubMed ID: 28740166 [TBL] [Abstract][Full Text] [Related]
13. Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids. Arsuaga J; Vázquez M; Trigueros S; Sumners D; Roca J Proc Natl Acad Sci U S A; 2002 Apr; 99(8):5373-7. PubMed ID: 11959991 [TBL] [Abstract][Full Text] [Related]
14. Conservation of complex knotting and slipknotting patterns in proteins. Sułkowska JI; Rawdon EJ; Millett KC; Onuchic JN; Stasiak A Proc Natl Acad Sci U S A; 2012 Jun; 109(26):E1715-23. PubMed ID: 22685208 [TBL] [Abstract][Full Text] [Related]
15. Biophysics of knotting. Meluzzi D; Smith DE; Arya G Annu Rev Biophys; 2010; 39():349-66. PubMed ID: 20192771 [TBL] [Abstract][Full Text] [Related]
16. Simulations of knotting of DNA during genome mapping. Jain A; Dorfman KD Biomicrofluidics; 2017 Mar; 11(2):024117. PubMed ID: 28798853 [TBL] [Abstract][Full Text] [Related]
17. AlphaFold predicts the most complex protein knot and composite protein knots. Brems MA; Runkel R; Yeates TO; Virnau P Protein Sci; 2022 Aug; 31(8):e4380. PubMed ID: 35900026 [TBL] [Abstract][Full Text] [Related]
18. Effects of knot type in the folding of topologically complex lattice proteins. Soler MA; Nunes A; Faísca PF J Chem Phys; 2014 Jul; 141(2):025101. PubMed ID: 25028045 [TBL] [Abstract][Full Text] [Related]
19. Knotting dynamics of DNA chains of different length confined in nanochannels. Suma A; Orlandini E; Micheletti C J Phys Condens Matter; 2015 Sep; 27(35):354102. PubMed ID: 26291786 [TBL] [Abstract][Full Text] [Related]