BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 28222698)

  • 1. ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data.
    Gonzalez S; Clavijo B; Rivarola M; Moreno P; Fernandez P; Dopazo J; Paniego N
    BMC Bioinformatics; 2017 Feb; 18(1):121. PubMed ID: 28222698
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.
    Tripathi KP; Evangelista D; Zuccaro A; Guarracino MR
    PLoS One; 2015; 10(11):e0140268. PubMed ID: 26581084
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
    Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P
    BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics.
    Duan X; Schmidt E; Li P; Lenox D; Liu L; Shu C; Zhang J; Liang C
    BMC Plant Biol; 2012 Jun; 12():94. PubMed ID: 22712730
    [TBL] [Abstract][Full Text] [Related]  

  • 5. dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond.
    Stajdohar M; Rosengarten RD; Kokosar J; Jeran L; Blenkus D; Shaulsky G; Zupan B
    BMC Bioinformatics; 2017 Jun; 18(1):291. PubMed ID: 28578698
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AtCAST3.0 update: a web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles.
    Kakei Y; Shimada Y
    Plant Cell Physiol; 2015 Jan; 56(1):e7. PubMed ID: 25505006
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.
    Robinson AJ; Tamiru M; Salby R; Bolitho C; Williams A; Huggard S; Fisch E; Unsworth K; Whelan J; Lewsey MG
    BMC Plant Biol; 2018 Sep; 18(1):200. PubMed ID: 30231853
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.
    Lohse M; Bolger AM; Nagel A; Fernie AR; Lunn JE; Stitt M; Usadel B
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W622-7. PubMed ID: 22684630
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RAP: A Web Tool for RNA-Seq Data Analysis.
    D'Antonio M; Libro P; Picardi E; Pesole G; Castrignanò T
    Methods Mol Biol; 2021; 2284():393-415. PubMed ID: 33835454
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Atlas - a data warehouse for integrative bioinformatics.
    Shah SP; Huang Y; Xu T; Yuen MM; Ling J; Ouellette BF
    BMC Bioinformatics; 2005 Feb; 6():34. PubMed ID: 15723693
    [TBL] [Abstract][Full Text] [Related]  

  • 11. TBro: visualization and management of de novo transcriptomes.
    Ankenbrand MJ; Weber L; Becker D; Förster F; Bemm F
    Database (Oxford); 2016; 2016():. PubMed ID: 28025338
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNAbrowse: RNA-Seq de novo assembly results browser.
    Mariette J; Noirot C; Nabihoudine I; Bardou P; Hoede C; Djari A; Cabau C; Klopp C
    PLoS One; 2014; 9(5):e96821. PubMed ID: 24823498
    [TBL] [Abstract][Full Text] [Related]  

  • 13. De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray.
    Benzekri H; Armesto P; Cousin X; Rovira M; Crespo D; Merlo MA; Mazurais D; Bautista R; Guerrero-Fernández D; Fernandez-Pozo N; Ponce M; Infante C; Zambonino JL; Nidelet S; Gut M; Rebordinos L; Planas JV; Bégout ML; Claros MG; Manchado M
    BMC Genomics; 2014 Nov; 15(1):952. PubMed ID: 25366320
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Advancing clinical genomics and precision medicine with GVViZ: FAIR bioinformatics platform for variable gene-disease annotation, visualization, and expression analysis.
    Ahmed Z; Renart EG; Zeeshan S; Dong X
    Hum Genomics; 2021 Jun; 15(1):37. PubMed ID: 34174938
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transcriptome walking: a laboratory-oriented GUI-based approach to mRNA identification from deep-sequenced data.
    French AS
    BMC Res Notes; 2012 Dec; 5():673. PubMed ID: 23217191
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Taverna: a tool for building and running workflows of services.
    Hull D; Wolstencroft K; Stevens R; Goble C; Pocock MR; Li P; Oinn T
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W729-32. PubMed ID: 16845108
    [TBL] [Abstract][Full Text] [Related]  

  • 18. eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing.
    Yuan T; Huang X; Dittmar RL; Du M; Kohli M; Boardman L; Thibodeau SN; Wang L
    BMC Genomics; 2014 Mar; 15():176. PubMed ID: 24593312
    [TBL] [Abstract][Full Text] [Related]  

  • 19. iDEP Web Application for RNA-Seq Data Analysis.
    Ge X
    Methods Mol Biol; 2021; 2284():417-443. PubMed ID: 33835455
    [TBL] [Abstract][Full Text] [Related]  

  • 20. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
    Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
    Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.