191 related articles for article (PubMed ID: 28222791)
1. epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data.
Vincent M; Mundbjerg K; Skou Pedersen J; Liang G; Jones PA; Ørntoft TF; Dalsgaard Sørensen K; Wiuf C
Genome Biol; 2017 Feb; 18(1):38. PubMed ID: 28222791
[TBL] [Abstract][Full Text] [Related]
2. Nucleosome Occupancy and Methylome Sequencing (NOMe-seq).
Lay FD; Kelly TK; Jones PA
Methods Mol Biol; 2018; 1708():267-284. PubMed ID: 29224149
[TBL] [Abstract][Full Text] [Related]
3. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
Rhie SK; Schreiner S; Farnham PJ
Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
[TBL] [Abstract][Full Text] [Related]
4. Links between DNA methylation and nucleosome occupancy in the human genome.
Collings CK; Anderson JN
Epigenetics Chromatin; 2017; 10():18. PubMed ID: 28413449
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules.
Kelly TK; Liu Y; Lay FD; Liang G; Berman BP; Jones PA
Genome Res; 2012 Dec; 22(12):2497-506. PubMed ID: 22960375
[TBL] [Abstract][Full Text] [Related]
6. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
[TBL] [Abstract][Full Text] [Related]
7. MIRA-seq for DNA methylation analysis of CpG islands.
Jung M; Kadam S; Xiong W; Rauch TA; Jin SG; Pfeifer GP
Epigenomics; 2015 Aug; 7(5):695-706. PubMed ID: 25881900
[TBL] [Abstract][Full Text] [Related]
8. Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.
Li D; Zhang B; Xing X; Wang T
Methods; 2015 Jan; 72():29-40. PubMed ID: 25448294
[TBL] [Abstract][Full Text] [Related]
9. Bisulfite-free epigenomics and genomics of single cells through methylation-sensitive restriction.
Niemöller C; Wehrle J; Riba J; Claus R; Renz N; Rhein J; Bleul S; Stosch JM; Duyster J; Plass C; Lutsik P; Lipka DB; Lübbert M; Becker H
Commun Biol; 2021 Feb; 4(1):153. PubMed ID: 33526904
[TBL] [Abstract][Full Text] [Related]
10. Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.
Cheung WA; Shao X; Morin A; Siroux V; Kwan T; Ge B; Aïssi D; Chen L; Vasquez L; Allum F; Guénard F; Bouzigon E; Simon MM; Boulier E; Redensek A; Watt S; Datta A; Clarke L; Flicek P; Mead D; Paul DS; Beck S; Bourque G; Lathrop M; Tchernof A; Vohl MC; Demenais F; Pin I; Downes K; Stunnenberg HG; Soranzo N; Pastinen T; Grundberg E
Genome Biol; 2017 Mar; 18(1):50. PubMed ID: 28283040
[TBL] [Abstract][Full Text] [Related]
11. Generating Multiple Base-Resolution DNA Methylomes Using Reduced Representation Bisulfite Sequencing.
Chatterjee A; Rodger EJ; Stockwell PA; Le Mée G; Morison IM
Methods Mol Biol; 2017; 1537():279-298. PubMed ID: 27924600
[TBL] [Abstract][Full Text] [Related]
12. Linkage disequilibrium analysis of allelic heterogeneity in DNA methylation.
Saito D; Suyama M
Epigenetics; 2015; 10(12):1093-8. PubMed ID: 26575360
[TBL] [Abstract][Full Text] [Related]
13. Simultaneous Measurement of DNA Methylation and Nucleosome Occupancy in Single Cells Using scNOMe-Seq.
Wasney M; Pott S
Methods Mol Biol; 2023; 2611():231-247. PubMed ID: 36807071
[TBL] [Abstract][Full Text] [Related]
14. NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule.
Requena F; Asenjo HG; Barturen G; Martorell-Marugán J; Carmona-Sáez P; Landeira D
Sci Rep; 2019 May; 9(1):8140. PubMed ID: 31148571
[TBL] [Abstract][Full Text] [Related]
15. Studying DNA Methylation in Single-Cell Format with scBS-seq.
Kunowska N
Methods Mol Biol; 2019; 1979():235-250. PubMed ID: 31028642
[TBL] [Abstract][Full Text] [Related]
16. Genome-Wide Analysis of DNA Methylation in Hematopoietic Cells: DNA Methylation Analysis by WGBS.
Jeong M; Guzman AG; Goodell MA
Methods Mol Biol; 2017; 1633():137-149. PubMed ID: 28735485
[TBL] [Abstract][Full Text] [Related]
17. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
[TBL] [Abstract][Full Text] [Related]
18. Reduced representation bisulfite sequencing to identify global alteration of DNA methylation.
Nagarajan A; Roden C; Wajapeyee N
Methods Mol Biol; 2014; 1176():23-31. PubMed ID: 25030916
[TBL] [Abstract][Full Text] [Related]
19. Targeted bisulfite sequencing for biomarker discovery.
Morselli M; Farrell C; Rubbi L; Fehling HL; Henkhaus R; Pellegrini M
Methods; 2021 Mar; 187():13-27. PubMed ID: 32755621
[TBL] [Abstract][Full Text] [Related]
20. Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis.
Sun Z; Cunningham J; Slager S; Kocher JP
Epigenomics; 2015 Aug; 7(5):813-28. PubMed ID: 26366945
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
